1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATATGTATACACTGATCACTGGAAAG
species | Oryza sativa |
transcript | LOC_Os05g34540.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|29644095|gb|CB649102.1|CB649102
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|88835971|gb|CI371076.1|CI371076
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGACCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|94362060|gb|CI052859.1|CI052859
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: ATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|218500356|gb|FG959036.1|FG959036
genomic: ATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|27920879|gb|CB096687.1|CB096687
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|29674550|gb|CB670825.1|CB670825
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86870306|gb|CI319412.1|CI319412
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: AATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|88218810|gb|CI216808.1|CI216808
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|88964736|gb|CI084734.1|CI084734
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: CCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86823510|gb|CI256447.1|CI256447
genomic: CCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|29689602|gb|CB685877.1|CB685877
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|88903083|gb|CI088621.1|CI088621
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACACTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|88906030|gb|CI089616.1|CI089616
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: TATGAACCCGTGAATGAGCCATCTCTTGAGAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAAEST: gi|86540663|gb|CI180869.1|CI180869
genomic: TATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|396941200|gb|HO188409.1|HO188409
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86860319|gb|CI323324.1|CI323324
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: CTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86431065|gb|CI083488.1|CI083488
genomic: CTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|89180572|gb|CI044851.1|CI044851
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86864690|gb|CI344233.1|CI344233
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: TCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|11233279|gb|AU164712.1|AU164712
genomic: TCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: TGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACANCGGTGACAGACGTTCTTAATEST: gi|88905861|gb|CI002199.1|CI002199
genomic: TGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: ATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|89194450|gb|CI116887.1|CI116887
genomic: ATATGAACCCGTGAATGAGCCATCTCTTGATAACTG-TTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|38471265|gb|CF955396.1|CF955396
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACTGTGACAGACGTTCTTAATEST: gi|58608603|gb|CK036636.1|CK036636
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|702923|gb|D49214.1|D49214
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGNATGAGNCATCTCTTGATAACTGTTTTGTCTCAACT AGGTATGATGCC-CCNCACATTTTGEST: gi|29667501|gb|CB663776.1|CB663776
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTG
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|58592473|gb|CF990781.1|CF990781
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTGGTCTCAACT AGCTATGATGCCACEST: gi|89186559|gb|CI048231.1|CI048231
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCAC
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86522208|gb|CI162414.1|CI162414
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: TGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAAEST: gi|88990851|gb|CI108238.1|CI108238
genomic: TGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|88907442|gb|CI090236.1|CI090236
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: ACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|86890190|gb|CI321367.1|CI321367
genomic: ACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|29631844|gb|CB636853.1|CB636853
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|4880961|gb|AU065260.1|AU065260
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: ATATGAACCCGTGAATGAGCCATCTCTTGGATAACTGTTTTGTCTCAACT AGCTATGGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAEST: gi|88245193|gb|CI245042.1|CI245042
genomic: ATATGAACCCGTGAATGAGCCATCTCTTG-ATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATG-ATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAA
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATEST: gi|218500069|gb|FG955684.1|FG955684
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGAACA-CGGTGACNGACGTTCTTAAEST: gi|87028068|gb|CI257228.1|CI257228
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGA-CAACGGTGACAGACGTTCTTAA
EST: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACT AGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
genomic: GATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttcta ... ctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAAT
tggttgtgttggagtataatagtataaacatctctggttgttattctctctgcagAGCTATGATGCCACCACACATTTTGAGACAACGGTGACAGACGTTCTTAATATGTATACACTGATCACTGGAAAG
ttgttattctctct CT-rich tract
tataatagtataaaca TA-rich tract