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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattattcaccttttatctgccggttcatactctacatctcatttcatttctttattaatcgatcactgaactgcatgcctaaaccgtacactttctctcaacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCA

Basic information

species Oryza sativa
transcript LOC_Os05g28180.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675538|gb|CB671813.1|CB671813
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|58670237|gb|CK058923.1|CK058923
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|3759904|gb|C97162.1|C97162
EST:     TACCTGGTGTATATGGCNCGGTT-CCCTGGGAGTTACATTNCATGTTTGG                         TTATTGGAAGTCACCATGAGAAGTGTTGTGATACACATCGTGTCCGGNTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88833424|gb|CI076905.1|CI076905
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|5038562|gb|AU070672.1|AU070672
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88906221|gb|CI375293.1|CI375293
EST:     TACCT-GTGTATATGGCCCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|89198377|gb|CI007437.1|CI007437
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|8335707|gb|BE040523.1|BE040523
EST:     TGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88380461|gb|CI518831.1|CI518831
EST:     ATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: ATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88964769|gb|CI084767.1|CI084767
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|27548799|gb|CA767547.2|CA767547
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTN
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|29638453|gb|CB643462.1|CB643462
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|86481338|gb|CI123971.1|CI123971
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88842057|gb|CI081313.1|CI081313
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|29637475|gb|CB642484.1|CB642484
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88462902|gb|CI519814.1|CI519814
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGANTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|88841548|gb|CI080804.1|CI080804
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|86536752|gb|CI176958.1|CI176958
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
EST: gi|87022773|gb|CI269709.1|CI269709
EST:     TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGG                         TTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC
genomic: TACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGgtaagcatta ... aacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatcgatcactgaactgcatgcctaaaccgtacactttctctcaacattgcagTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCA
                                    ctttctctca  CT-rich tract