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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaattctttctttacatcaatttgttcatacgagcctgtattaagcagatgagtatattttataatcttgaactgtgcccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTCTTCATTAAAAGTGAT

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627199|gb|CB632210.1|CB632210
EST:     ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTT                         GTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
genomic: ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTTgtaagaaatt ... cccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
EST: gi|29680539|gb|CB676814.1|CB676814
EST:     ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTT                         GTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
genomic: ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTTgtaagaaatt ... cccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
EST: gi|29627859|gb|CB632870.1|CB632870
EST:     ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTT                         GTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
genomic: ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTTgtaagaaatt ... cccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
EST: gi|29670272|gb|CB666547.1|CB666547
EST:     ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTT                         GTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
genomic: ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTTgtaagaaatt ... cccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
EST: gi|29628146|gb|CB633157.1|CB633157
EST:     ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTT                         GTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
genomic: ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTTgtaagaaatt ... cccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
EST: gi|29664573|gb|CB660848.1|CB660848
EST:     ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTT                         GTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC
genomic: ACAGGAGAAGTTCCTCAATCCATCTTGAATTTGGGAAATCTCAATTCTTTgtaagaaatt ... cccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctgtattaagcagatgagtatattttataatcttgaactgtgcccaattcagGTTTCTTGGGAACAATAGCCTTACAGGAAAGTTGCCGGATGGTATAAGCTCTTCATTAAAAGTGAT
                atgagtatattttata  TA-rich tract