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...gaaaatacaattattgtgatggatatattatgttacgcttctcttgtttgtatgttgttgttttgaccaatatgatcattaatgttgccttttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG
species | Oryza sativa |
transcript | LOC_Os05g10810.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29615462|gb|CB620474.1|CB620474
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29664325|gb|CB660600.1|CB660600
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29641508|gb|CB646515.1|CB646515
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29646483|gb|CB651490.1|CB651490
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGEST: gi|29664324|gb|CB660599.1|CB660599
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTG
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29664362|gb|CB660637.1|CB660637
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29646484|gb|CB651491.1|CB651491
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|29614065|gb|CB619078.1|CB619078
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATEST: gi|66928227|gb|CX115075.1|CX115075
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAA-GGAATATG CCTGTACATAAATGGGTTG-TCGCCATA-TTACTTTCCTTGCATGCGAAATEST: gi|29615460|gb|CB620472.1|CB620472
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
EST: TGAGTATTGGAGAAAATGGAATATG CCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
genomic: TGAGTATTGGAGAAAATGGAATATGgtatgctttc ... tttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAAT
gtttgtatgttgttgttttgaccaatatgatcattaatgttgccttttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG
cattaat putative branch site (score: 15)
tgttgccttttttc CT-rich tract
aatatgatcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaatacaattattgtgatggatatattatgttacgcttctcttgtttgtatgttgttgttttgaccaatatgatcattaatgttgccttttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG
- aaatacaa
- - - - - - - tgtgatg
- - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgcc