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gtttgcccttcaatttgtatagcacgatcatcatggcatgttgacactgtatgcttaatgtaataactatttgttcttttgtatttggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGTATTTTGG
species | Oryza sativa |
transcript | LOC_Os05g03820.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATATTTCCTGAG GTCAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|11442624|gb|BF430527.1|BF430527
genomic: ATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|2311262|gb|C27417.1|C27417
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|58663354|gb|CK052040.1|CK052040
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|58695197|gb|CK083884.1|CK083884
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|218498945|gb|FG948066.1|FG948066
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCTTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|58663415|gb|CK052101.1|CK052101
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|33676123|gb|CF304362.1|CF304362
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAG GTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGEST: gi|29679436|gb|CB675711.1|CB675711
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
EST: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACGATATTTCCTGAG GTCAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
genomic: TGCCTACTTTGAATGACTGGGAGAACCATCTAACAACAATATTTCCTGAGgtttgccctt ... tggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGG
ttgacactgtatgcttaatgtaataactatttgttcttttgtatttggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGTATTTTGG
taataac putative branch site (score: 1)
ttaatgtaataactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcccttcaatttgtatagcacgatcatcatggcatgttgacactgtatgcttaatgtaataactatttgttcttttgtatttggcttgcagGTTAGGCTGAAGCGATATCTAGAGATGAGAGGTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGTATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT