1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agatgttctatgaacaattgatatttggaaggaaaacattaatataagtgaggtattgtttgccatctcttttaattcaccgtcattctgcttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGTCAATTTGGCTAGGGGTTTCTTTAACCTTGTTCTGATTTGCACGTGCGG
species | Oryza sativa |
transcript | LOC_Os04g58750.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|88277700|gb|CI398502.1|CI398502
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|86482095|gb|CI124728.1|CI124728
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|27410209|gb|CA923279.1|CA923279
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|88223137|gb|CI222986.1|CI222986
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|88447419|gb|CI544293.1|CI544293
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|88476120|gb|CI413391.1|CI413391
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|88280916|gb|CI400435.1|CI400435
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGGATATGACTGAACCAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|33675770|gb|CF304009.1|CF304009
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTTGGTGTGAACAATCATTGGACATGGAAGCEST: gi|29636566|gb|CB641575.1|CB641575
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTT-GGTGTGAACAATCATTGGACATGGAAGC
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|87005460|gb|CI285682.1|CI285682
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTCGTTCATTTGEST: gi|88479558|gb|CI416829.1|CI416829
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|88469813|gb|CI407084.1|CI407084
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|86884457|gb|CI337025.1|CI337025
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGEST: gi|33679197|gb|CF307436.1|CF307436
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
EST: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATEST: gi|86834784|gb|CI345868.1|CI345868
genomic: TTGAATATGACTGAACAAATTTGTAGTTCAGAAAATGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCAT
EST: TGAATATGACTGAACAAATTTGTAGTTCAGAAAAGTGCACATAACTTCAG GTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTCTTGTTCATTTG
genomic: TGAATATGACTGAACAAATTTGTAGTTCAGAAAA-TGCACATAACTTCAGgtatatgctt ... cttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTG
aagtgaggtattgtttgccatctcttttaattcaccgtcattctgcttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGTCAATTTGGCTAGGGGTTTCTTTAACCTTGTTCTGATTTGCACGTGCGG
ttttaat putative branch site (score: 3)
ttctgctt putative PPT
tcttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgttctatgaacaattgatatttggaaggaaaacattaatataagtgaggtattgtttgccatctcttttaattcaccgtcattctgcttgtggcagGTGTTTTGGTGTGAACAATCATTGGACATGGAAGCAGCTGTTGTTCATTTGTCAATTTGGCTAGGGGTTTCTTTAACCTTGTTCTGATTTGCACGTGCGG
- - - - - -gaacaat
- - - - - - - - - - - - - - -aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg