Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtgcacgttatttttggttcttcagagatagcctttccttgtctgttcatccctatccttagagtgcaatactctccaacctggtgaaacaaacacaattgttttccatttttgttttcagCTGGTTGATTTTGAGTGCTGGAAAATGATGTTCACCAAACAAAAACATGAGAAGGCTCCTGGCCGCATCAATAACAAATCCTCTTTCCCTGGCCACTTGG

Basic information

species Oryza sativa
transcript LOC_Os04g58700.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g58700.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G119759_T06 (Zea mays), 3'ss of exon 10
--------gtaaggtgca-cgttattt-ttggttcttcagagatagcctttccttgtctgttcatcc---ctatccttagagtgcaatactctccaacctggtgaaaca--aacacaattgttttccatttttgttttcagCTGGTTGATTTTGAGTGCTGGAAAATGATGTTCACCAAACA---------AAAACATGAGAAGGCTCCTGGCCGCATCAATAACAAATCCTCTTTCCCTGGCCACTTGG
           |  |||| | || ||  |||||||  ||     ||  || | |  | | ||    |    ||   |||   |||| | ||      | |||| | |||  ||      | |  | | | | ||||| |||||||| |||||||| |||||||||||||||||| | | |||          | | | |||||||||| ||| | | | || | |||||||||||| || |         
gtatgtcctgcacatgcatccttgttcgttggttcagcaactgaagatttgcatgatgttttggctcgtcttacatttatcatgca-tccttgttcgcttggtcagacagtaatttgtctctgctacgtgtctgtttgcagCTGGTGGATTTTGAATGCTGGAAAATGATGTTCTCGAGACACTCCATCTCGAGAGACGAGAAGGCTCGTGGGCACTTGAACAGCAAATCCTCTTTTCCCG---------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatactctccaacctggtgaaacaaacacaattgttttccatttttgttttcagCTGGTTGATTTTGAGTGCTGGAAAATGATGTTCACCAAACAAAAACATGAGAAGGCTCCTGGCCGCATCAATAACAAATCCTCTTTCCCTGGCCACTTGG
                                ttgttttccatttttg  CT-rich tract
                                         atttttgtttt  TA-rich tract