1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaattgtcatgttgtgtcccctttgagacaaaacggtatttctgacttggtacatattaactgactcttacacgccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCACTAGTTCCAAGAAAGACACGAGGAAAAGCAAGCAGAAGAGTGGCATGA
species | Oryza sativa |
transcript | LOC_Os04g40740.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88429705|gb|CI548902.1|CI548902
genomic: TGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: GCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|3760761|gb|C98015.1|C98015
genomic: GCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|86534966|gb|CI175172.1|CI175172
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88282300|gb|CI403696.1|CI403696
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|29631150|gb|CB636159.1|CB636159
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTGGCCGAAACTCGATATAAGGAATTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88266525|gb|CI377427.1|CI377427
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCCACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|89175699|gb|CI042720.1|CI042720
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88264898|gb|CI367549.1|CI367549
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88488975|gb|CI426246.1|CI426246
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88439364|gb|CI536336.1|CI536336
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88464162|gb|CI532097.1|CI532097
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: CGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88446502|gb|CI536533.1|CI536533
genomic: CGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|286456|gb|D15264.1|D15264
genomic: TGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88417822|gb|CI535981.1|CI535981
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCEST: gi|88849715|gb|CI089821.1|CI089821
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
EST: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTTGACGAG CTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
genomic: TTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGgtaaaattgt ... ccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCC
aaaacggtatttctgacttggtacatattaactgactcttacacgccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCACTAGTTCCAAGAAAGACACGAGGAAAAGCAAGCAGAAGAGTGGCATGA
cgccctcttc CT-rich tract
tacatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattgtcatgttgtgtcccctttgagacaaaacggtatttctgacttggtacatattaactgactcttacacgccctcttcagCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCACTAGTTCCAAGAAAGACACGAGGAAAAGCAAGCAGAAGAGTGGCATGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG