1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aggagagtgtgctgttttggacataggacattatgatcacccagttttggttttgcattatttctacatccctgagcttcttgctttttccgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGTCTAACTACG
species | Oryza sativa |
transcript | LOC_Os04g23180.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCAGGATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|14713834|gb|AU197796.1|AU197796
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|88994589|gb|CI117741.1|CI117741
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|8334730|gb|BE039714.1|BE039714
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACCGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCGAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|88473287|gb|CI410558.1|CI410558
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGGATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|58672630|gb|CK061316.1|CK061316
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|29613518|gb|CB618531.1|CB618531
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|86434642|gb|CI105875.1|CI105875
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|4716435|gb|AU057551.1|AU057551
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|9865445|gb|AU101195.1|AU101195
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACNTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGEST: gi|88491764|gb|CI429036.1|CI429036
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGNTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGTTCATGEST: gi|86494278|gb|CI136911.1|CI136911
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
EST: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAG TTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
genomic: TGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGgtgctcttct ... cgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATG
tttggttttgcattatttctacatccctgagcttcttgctttttccgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGTCTAACTACG
cttcttgctttttccg CT-rich tract
attatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggagagtgtgctgttttggacataggacattatgatcacccagttttggttttgcattatttctacatccctgagcttcttgctttttccgttttacagTTCCGGGAGGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGTCTAACTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - -tgctgtt
- - - - - - - - - - - - - - - ttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatcc