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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtctaatcagtatttacttatcatcttccttgcggcaaggcagtctgagttctttttaatacattacacatcagctttgctatcctttttcttttgtagGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCA

Basic information

species Oryza sativa
transcript LOC_Os04g09860.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4878247|gb|AU062546.1|AU062546
EST:     ATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGCTGGAGAT                         GACATATCTAGATGCCTNCTTTGGGTTCAACGTCGTCATTGCACATGGCCA
genomic: ATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATgtatgcccta ... tcttttgtagGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCA
EST: gi|66924657|gb|CX111505.1|CX111505
EST:     ATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATATGGTGGAGAT                         GACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATCGCACATGGCCA
genomic: ATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATgtatgcccta ... tcttttgtagGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCA
EST: gi|4878268|gb|AU062567.1|AU062567
EST:     ATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGAT                         GACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCA
genomic: ATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATgtatgcccta ... tcttttgtagGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagttctttttaatacattacacatcagctttgctatcctttttcttttgtagGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCA
         ttttaat  putative branch site (score: 3)
                              ctttgctatccttttt  putative PPT
     ttctttttaatacatt  TA-rich tract