1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagggaacctccatatgtgctgtagaaaattctatgtgcattgttttctctcagtttttgccatttaattaccctattctatatgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCCTCTCAGTAGCCGAGACTGCAGGCATGGATGTGGATGGCTTTGAGTTCT
species | Oryza sativa |
transcript | LOC_Os03g63920.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|88460682|gb|CI534554.1|CI534554
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|88289842|gb|CI525174.1|CI525174
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTTTCTGAAATCCGAGCCGTCEST: gi|86835243|gb|CI346718.1|CI346718
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTCATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|88839031|gb|CI377955.1|CI377955
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|89192686|gb|CI049984.1|CI049984
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|87041283|gb|CI195905.1|CI195905
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|86597699|gb|CI274690.1|CI274690
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|88270421|gb|CI385679.1|CI385679
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCEST: gi|86834808|gb|CI345892.1|CI345892
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
EST: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAG CGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
genomic: CTTTCGTCCAAGAAAGCTTCGCTTATAAGCAAAGAAGAAGCACCTGATAGgtaagggaac ... atgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTC
gcattgttttctctcagtttttgccatttaattaccctattctatatgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCCTCTCAGTAGCCGAGACTGCAGGCATGGATGTGGATGGCTTTGAGTTCT
atttaat putative branch site (score: 6)
atttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggaacctccatatgtgctgtagaaaattctatgtgcattgttttctctcagtttttgccatttaattaccctattctatatgcatgtagCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCCGAGCCGTCCTCTCAGTAGCCGAGACTGCAGGCATGGATGTGGATGGCTTTGAGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA