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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattttatttgcatgacgtgggaacatatatttgcatgagagtggaatgggtgttatcctgaagttcgctatcatatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG

Basic information

species Oryza sativa
transcript LOC_Os03g63020.4
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63020.4 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G045241_T05 (Zea mays), 3'ss of exon 16
gtgagattttatttgcatgacgtgggaacatatatttgcatgagagtggaatgggtgttatcctgaagttc--gctatcatatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
||||||  ||||| |  ||  |   ||    || |||         || ||||||||   || |||  ||   |||||| |  | ||||||||||||| |||||||| |||||||| ||| | |||||| |||| |
gtgagaaattattagggtg-tgcaagatatcattttta--------tgcaatgggtgccgtcatgatatttttgctatcctgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613120|gb|CB618133.1|CB618133
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29644979|gb|CB649986.1|CB649986
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|89167683|gb|CI018289.1|CI018289
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29663527|gb|CB659802.1|CB659802
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|34996388|gb|CF569133.1|CF569133
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29666009|gb|CB662284.1|CB662284
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---CAG
EST: gi|29666008|gb|CB662283.1|CB662283
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---CAG
EST: gi|29638287|gb|CB643296.1|CB643296
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29656192|gb|CB652467.1|CB652467
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29613155|gb|CB618168.1|CB618168
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|33801021|gb|CF326384.1|CF326384
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29633044|gb|CB638053.1|CB638053
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|33381337|gb|CF196680.1|CF196680
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|218497584|gb|FG955131.1|FG955131
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29613395|gb|CB618408.1|CB618408
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29628841|gb|CB633852.1|CB633852
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTTTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|8856640|gb|AU093958.1|AU093958
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcatgagagtggaatgggtgttatcctgaagttcgctatcatatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
                                        tatcatat  TA-rich tract