1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgggtttgtaacatgttgatgatatagcttttgttgcttgatgttatttgtctgagaataatgctctatattaacatggtagtatttgtcattctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT
species | Oryza sativa |
transcript | LOC_Os03g63020.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTAEST: gi|29613120|gb|CB618133.1|CB618133
genomic: ATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
EST: ATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTAEST: gi|29666009|gb|CB662284.1|CB662284
genomic: ATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
EST: ACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAAGAAGGCCAACTGCTGAGCAATCACTEST: gi|58675001|gb|CK063688.1|CK063688
genomic: ACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACG-AAGAAGGCCAACTGCTGAGCAATCACT
EST: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAEST: gi|34996388|gb|CF569133.1|CF569133
genomic: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAA
EST: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTAEST: gi|29666008|gb|CB662283.1|CB662283
genomic: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
EST: ACTTGATTCAG CAAC-TTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTAEST: gi|218497584|gb|FG955131.1|FG955131
genomic: ACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
EST: ATCGACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTAEST: gi|33381171|gb|CF196514.1|CF196514
genomic: ATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
EST: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAG CAACTTTGTTCEST: gi|33381337|gb|CF196680.1|CF196680
genomic: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTC
EST: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAG CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
genomic: TATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGgttagttatg ... attctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTA
atttgtctgagaataatgctctatattaacatggtagtatttgtcattctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT
tattaac putative branch site (score: 1)
tcattct putative PPT
tatattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtttgtaacatgttgatgatatagcttttgttgcttgatgttatttgtctgagaataatgctctatattaacatggtagtatttgtcattctgacagCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - gttgatg
- - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctc