1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtgcttttccatcctagtttcattttcatgtagtgtcagcataatctgaaagtacatgctgtgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGATTCAGAAAGAAAGGACAGAGTTGAACCTCGAGAAAGCAGAAGAGACCAT
species | Oryza sativa |
transcript | LOC_Os03g62640.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|86502553|gb|CI145186.1|CI145186
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|18385491|gb|BM418690.1|BM418690
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: CAGGAGTAGAGAAGTAAAAGAAGGAAGCCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAGGGACCGCCAATGGTCAGGCATCCAGGGATAGAGEST: gi|87008593|gb|CI315051.1|CI315051
genomic: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCG-CAATGGTCAGGCATCCAGGGATAGAG
EST: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|88842454|gb|CI081710.1|CI081710
genomic: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|88223512|gb|CI223361.1|CI223361
genomic: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|58682879|gb|CK071566.1|CK071566
genomic: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|454535|gb|D28304.1|D28304
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTTAAGATGACAGGCG ATCAAGAGA-TACAGCAAGGACCGNA-TGGTCAGGCATCCAGGGTTAGAG-EST: gi|86499113|gb|CI141746.1|CI141746
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|86886570|gb|CI322802.1|CI322802
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAACATGACAGGCG ATCAATAGAATACAGCAAGGACCGCAAT-GTCAGGCATCCAGGGATAGAGAEST: gi|29664073|gb|CB660348.1|CB660348
genomic: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|88841254|gb|CI080708.1|CI080708
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: ACAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29661288|gb|CB657563.1|CB657563
genomic: ACAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|86256324|gb|CI012614.1|CI012614
genomic: GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
genomic: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
gtttcattttcatgtagtgtcagcataatctgaaagtacatgctgtgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGATTCAGAAAGAAAGGACAGAGTTGAACCTCGAGAAAGCAGAAGAGACCAT
attttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcttttccatcctagtttcattttcatgtagtgtcagcataatctgaaagtacatgctgtgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGATTCAGAAAGAAAGGACAGAGTTGAACCTCGAGAAAGCAGAAGAGACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA