1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...agtcttcatggagtatgcgccacagccactcccttggtgatgcctcttatgtcatgtattattgcgctttttagctcatgttaagtttaatgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGGCAACAAAGCAAATTGTTGCACTTCTCAGTGCCCCCCTGGAGAAATATA
species | Oryza sativa |
transcript | LOC_Os03g58700.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|29621778|gb|CB626789.1|CB626789
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|29622156|gb|CB627167.1|CB627167
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|29686657|gb|CB682932.1|CB682932
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|29613031|gb|CB618044.1|CB618044
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|29616228|gb|CB621240.1|CB621240
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|33677499|gb|CF305738.1|CF305738
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGEST: gi|33794974|gb|CF323367.1|CF323367
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
EST: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTG GGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
genomic: TTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttc ... tgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGG
cttatgtcatgtattattgcgctttttagctcatgttaagtttaatgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGGCAACAAAGCAAATTGTTGCACTTCTCAGTGCCCCCCTGGAGAAATATA
gtttaat putative branch site (score: 44)
atgttaagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcttcatggagtatgcgccacagccactcccttggtgatgcctcttatgtcatgtattattgcgctttttagctcatgttaagtttaatgttggacagGGTGCATGCGTAAAGAAACTTTCAGGGAATGCAAAACTTGAAGATAGCAGGGCAACAAAGCAAATTGTTGCACTTCTCAGTGCCCCCCTGGAGAAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -cttcatg
- - - - - -agtatgc
- - - - - - - - - - - cagccac
- - - - - - - - - - - - - - - - cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt