1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cagcatgttacgaattgcaaattattggtttttcaacatgatgaattgtgctttaacatttgaaccacttccttatctggtggcaatttatcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG
species | Oryza sativa |
transcript | LOC_Os03g52840.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCANAATTTGCACAG AGCTTGACAGCAAAAGGCTAEST: gi|58691302|gb|CK079989.1|CK079989
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTA
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38474524|gb|CF958657.1|CF958657
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38479794|gb|CF963883.1|CF963883
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29687054|gb|CB683329.1|CB683329
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29678031|gb|CB674306.1|CB674306
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: AGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTGGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29613559|gb|CB618572.1|CB618572
genomic: AGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29672939|gb|CB669214.1|CB669214
genomic: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: AGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|4716856|gb|AU057972.1|AU057972
genomic: AGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38474897|gb|CF959030.1|CF959030
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|13420583|gb|AU174673.1|AU174673
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTEST: gi|29624607|gb|CB629618.1|CB629618
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCT
EST: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29614629|gb|CB619642.1|CB619642
genomic: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: GCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29618932|gb|CB623944.1|CB623944
genomic: GCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29622695|gb|CB627706.1|CB627706
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29638079|gb|CB643088.1|CB643088
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|11442748|gb|BF430651.1|BF430651
genomic: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29675548|gb|CB671823.1|CB671823
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38476360|gb|CF960493.1|CF960493
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29629705|gb|CB634714.1|CB634714
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29687894|gb|CB684169.1|CB684169
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29662689|gb|CB658964.1|CB658964
genomic: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: AGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29621679|gb|CB626690.1|CB626690
genomic: AGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29664044|gb|CB660319.1|CB660319
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29646106|gb|CB651113.1|CB651113
genomic: CAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|33663440|gb|CF294407.1|CF294407
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29646446|gb|CB651453.1|CB651453
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38482519|gb|CF966548.1|CF966548
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTGGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29665919|gb|CB662194.1|CB662194
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: GAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29629706|gb|CB634715.1|CB634715
genomic: GAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: GTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29687453|gb|CB683728.1|CB683728
genomic: GTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29613482|gb|CB618495.1|CB618495
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|58692040|gb|CK080727.1|CK080727
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|55410185|gb|CV722561.1|CV722561
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38472677|gb|CF956809.1|CF956809
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|38478032|gb|CF962165.1|CF962165
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|428581|gb|D24733.1|D24733
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTNACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATEST: gi|29674038|gb|CB670313.1|CB670313
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAAGCTACGAACTTGTCTCTGGTGGGACTGACAACCAEST: gi|29674140|gb|CB670415.1|CB670415
genomic: ACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCA
EST: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG AGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
genomic: TCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGgtatgtgttc ... tcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCAT
ttgtgctttaacatttgaaccacttccttatctggtggcaatttatcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG
ctttaac putative branch site (score: 3)
tcacttcc putative PPT
tttaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcatgttacgaattgcaaattattggtttttcaacatgatgaattgtgctttaacatttgaaccacttccttatctggtggcaatttatcacttccagAGCTTGACAGCAAAAGGCTACGAACTTGTCTCTGGTGGGACTGACAACCATTTAGTGTTGGTAAATCTCAAGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG