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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcacttctcttcttacagcgtgcagtctcacacttacataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTATGGAATACTTTTCCCTATTCACCTACT

Basic information

species Oryza sativa
transcript LOC_Os03g49730.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G457881_T03 (Zea mays), 3'ss of exon 12
---------gtaaggcacttctct---tcttacagcgtgcagtctcacacttac-----ataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTATGGAATACTTTTCCCTATTCACCTACT------
         ||| ||| ||  | |   || |      | ||  ||     ||||     | ||| ||||||| ||||||||||| ||     ||    |||| |||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||| || |   || ||   |  |||       
tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATGGTATGGACTATTAGCCCTTACCTATTTACCTCACAC

upper sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G457881_T01 (Zea mays), 3'ss of exon 14
---------gtaaggcacttctct---tcttacagcgtgcagtctcacacttac-----ataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTATGGAATACTTTTCCCTATTCACCTACT
         ||| ||| ||  | |   || |      | ||  ||     ||||     | ||| ||||||| ||||||||||| ||     ||    |||| |||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||                              
tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678607|gb|CK067294.1|CK067294
EST:     TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAA                         GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
genomic: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctcacacttacataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTATGGAATACTTTTCCCTATTCACCTACT
                             cactaat  putative branch site (score: 2)
                                             cttctgcc  putative PPT
          ttacataaaa  TA-rich tract