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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgtacttccaacttaaactgtagacacagctgtgacttctactttccaagctttattggaaataacttatacagatttatcttttgtgattttcacagATTGGTGATTGTTTGGGCACTCTTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGACACCTATGTTG

Basic information

species Oryza sativa
transcript LOC_Os03g49420.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49420.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G033619_T02 (Zea mays), 3'ss of exon 11
----attgtacttccaacttaaactgta-----gacacagctgtg-acttctactttccaagctttattggaaataacttatacagatttatcttttgtgattttcacagATTGGTGATTGTTTGGGCACTCTTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGACACCTATGTTG
    ||||| |||  ||| ||   | |      |  |||  |||  | | ||  || || | | |||||||       ||  | | || ||| |||||||| |    ||||||||||||||| | |||||||| ||||| || |||||||||| |||  |||| ||||| |||||||| ||| | ||||||||||||||||||
ttgtattgtgctttgaacctactttttgtgtggggaacaattgtatagtgcttattacctaaccttattgg------tttgaaaacatgtat-ttttgtgact---gcagATTGGTGATTGTCTAGGCACTCTCGTTAAAACCTTCAAGACTTCTTTTATTCCGTTCTTCGATGAACTCTCCATGTATTTGACACCTATGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681490|gb|CB677765.1|CB677765
EST:     AGGATCTACTCAGAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAA                         ATTGGTGATTGTTTGGGCACTCTTG
genomic: AGGATCTACTCAGAGAAGAAAATGAACAGGAGGATGAAATCTTCGATCAAgtaagctatt ... attttcacagATTGGTGATTGTTTGGGCACTCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaagctttattggaaataacttatacagatttatcttttgtgattttcacagATTGGTGATTGTTTGGGCACTCTTGTTAAGACGTTCAAGACTTATTTCCTTCCATTCTTTGATGAACTTTCCGTCTATTTGACACCTATGTTG
                aaataac  putative branch site (score: 2)
                                              ttttcac  putative PPT
                aaataacttatacaga  TA-rich tract