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gtattgcttctttctgctcataccagctgtgtacagccttataaatccccaagtctttagctatgtaatggaaaggttcataatatttaaccactagctgtttattggctgtattgagaatttacctgtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATCCGTTGCAACAGCTGGAGCAAACAAACACATGAGTGA
species | Oryza sativa |
transcript | LOC_Os03g44900.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGEST: gi|2310206|gb|C26361.1|C26361
genomic: CTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAGgtattgcttc ... gtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATG
EST: AGCGGNTATTGGGCTTGGGCAGGTACAAGTACCAG AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGEST: gi|58590602|gb|CF988910.1|CF988910
genomic: AGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAGgtattgcttc ... gtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATG
EST: CTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGEST: gi|58586667|gb|CF984975.1|CF984975
genomic: CTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAGgtattgcttc ... gtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATG
EST: TCTATTTCCTCCCAGAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGEST: gi|58676955|gb|CK065642.1|CK065642
genomic: TCTATTTCCTCCCA-AGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAGgtattgcttc ... gtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATG
EST: CTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATG
genomic: CTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAGgtattgcttc ... gtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATG
atatttaaccactagctgtttattggctgtattgagaatttacctgtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATCCGTTGCAACAGCTGGAGCAAACAAACACATGAGTGA
atttaac putative branch site (score: 3)
cctgtct putative PPT
tgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcttctttctgctcataccagctgtgtacagccttataaatccccaagtctttagctatgtaatggaaaggttcataatatttaaccactagctgtttattggctgtattgagaatttacctgtctgtgcagAATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATCCGTTGCAACAGCTGGAGCAAACAAACACATGAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA