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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttcttaaaaataatgccttgctttagttatctattgaatatgtgaacttgatacctggcttatggctaaataacataatatatgcagATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTA

Basic information

species Oryza sativa
transcript LOC_Os03g42820.4
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42820.4 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G342105_T02 (Zea mays), 3'ss of exon 6
gtacgttcttaaaaataatgccttgctttagtta-----tctattgaatatgtgaacttgatacctggct-----tatggctaaataacataata----tatgcagATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTA---
||| | ||||||||  | | ||||| |||  |||     |||| ||||| ||||| ||| | | |    |     ||    |||||||||||||     | |  ||||| | | | |||||   ||||||||||| ||||  ||  |||| ||| | |||||||||||||||||  ||||||| ||||||||||||||||||||||   
gtatgatcttaaaa-catttccttgttttgcttaattggtctactgaatttgtgagcttcaaagccaattacgattaaacataaataacataatggtattgtctagATATTGAAAGGACCA---ATTGGACCAGGCAACAGAATCATAGATATGGTCACAGGACCATACAAACTCATTAGACGGTGTGAAGTGACTGCAATTCTTATAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaatatgtgaacttgatacctggcttatggctaaataacataatatatgcagATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTA
                                   aaataac  putative branch site (score: 2)
                                  taaataacataatata  TA-rich tract