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...caaatcttcataaaactgaaagaaacattccttcgacccatgaacatatttcttttttaacaaacaacaaaatcattgtctgatactattcgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAG
species | Oryza sativa |
transcript | LOC_Os03g38590.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTATCGTTGGG GTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|88511461|gb|CI438967.1|CI438967
genomic: TTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG GTGTTTTATTTTCTTGGATTCCCAATNTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|29662769|gb|CB659044.1|CB659044
genomic: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATAGTGTTATCGTTGGG GTGTTTTATTTTGTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|29662682|gb|CB658957.1|CB658957
genomic: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG GTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|86511240|gb|CI153873.1|CI153873
genomic: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG GTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|29662718|gb|CB658993.1|CB658993
genomic: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG GTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|86261561|gb|CI017303.1|CI017303
genomic: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG GTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCEST: gi|88509345|gb|CI436851.1|CI436851
genomic: AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
EST: TAGGCAATACTGTTATCGTTGGG GTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
genomic: TAGGCAATACTGTTATCGTTGGGgtgagtgaaa ... cgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
atatttcttttttaacaaacaacaaaatcattgtctgatactattcgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAG
ttttttaacaaacaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatcttcataaaactgaaagaaacattccttcgacccatgaacatatttcttttttaacaaacaacaaaatcattgtctgatactattcgatgagcagGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - cataaaa
- - - - - - - - - aaagaaa
- - - - - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatac