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...tcatatctaaatgacaatatatatttcccactgtattgcatacaattaaagataaagaaattagctgttaattaaatttttgtgtgacttattttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTTTATATCACTCCTGATGTTGGGTTTGACTGGGTGTCTGGCAAGGGAACTC
species | Oryza sativa |
transcript | LOC_Os03g31550.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTCGGATGGAACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAG TTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTTEST: gi|218479236|gb|FG969139.1|FG969139
genomic: CTCGGATGGAACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAGgtaaagtcat ... attttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTT
EST: ACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAG TTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTTEST: gi|218495632|gb|FG967039.1|FG967039
genomic: ACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAGgtaaagtcat ... attttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTT
EST: CTCGGATGGAACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAG TTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTTEST: gi|29675056|gb|CB671331.1|CB671331
genomic: CTCGGATGGAACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAGgtaaagtcat ... attttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTT
EST: CTCGGATGGAACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAG TTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTT
genomic: CTCGGATGGAACCTGTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAGgtaaagtcat ... attttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTT
ttaaagataaagaaattagctgttaattaaatttttgtgtgacttattttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTTTATATCACTCCTGATGTTGGGTTTGACTGGGTGTCTGGCAAGGGAACTC
tgttaat putative branch site (score: 57)
cttatttt putative PPT
ataaagaaattagctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatatctaaatgacaatatatatttcccactgtattgcatacaattaaagataaagaaattagctgttaattaaatttttgtgtgacttattttgacagTTGGTTCTAGCATGCTACCTGGAAAGGATAGATCTCTCTGCTCATGGATTTTATATCACTCCTGATGTTGGGTTTGACTGGGTGTCTGGCAAGGGAACTC
- - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgtt