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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagatgaacctagattcatcagtagtgtcacttttcaagtatatatatttgtcgacatctttgcatatcctgcttgatcacttcattcgctaccttcaatttcaaaaaactgcagGTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAG

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 11
gtaaaaagatgaacctagattcatcagtagtgtcacttttcaagtatatatatttgtcgacatctttgc-atatcctgcttgatcacttcattcgctaccttcaatttca---aaaaactgcagGTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAG
||||||  ||  | | ||||||||||  | ||||||| ||  | |||  |||| | ||  | || |  | |  |  |   | ||  | ||||||  | | ||   | | |   |  || || ||||||||||||||||||||||||||||||| || ||||| ||  ||||||| |
gtaaaat-atagatcaagattcatca-caatgtcactattataatatg-atatctatcaccttcataacgaccttatcgctcattgcctcattcaattcattggctgtgatttatcaagtgaagGTGACATCTGGAATGAGTCCAGCTTTCAATCTTTATGGGTGTGCCTTGATTG

upper sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 11
lower sequence: PP1S81_64V6.1 (Physcomitrella patens), 3'ss of exon 10
------gtaaaaagatgaacctagattcatcagtagtgtcacttttcaagtatatatatttgtcgacatctt---tgcatatcctgcttgatcacttc----attcgc-taccttcaatttcaaaaaact----gcagGTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAG
      || |  |  |      |      | |    | |   | |  |  ||||||||| | |  |||||||   | ||    || | | | ||        ||||   | |   || | | |      |    ||||   ||||| ||||||||||||||||| ||| ||||||||||||  || || |
gtagttgtcactatctctggtcaagccatttatatatatatatatatatatatatatatatatgcacatcttgtgtacagtatctacgttagcatccttggaattcctgtgctaacagtgttagtggcttttatgcagACTACATCAGGAATGAGTCCAGCTTTTAACGTCTATGGATGCAATTTAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatatcctgcttgatcacttcattcgctaccttcaatttcaaaaaactgcagGTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAG
           gcttgat  putative branch site (score: 5)
                                  ttcaatttcaaaaaa  TA-rich tract