1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcacttttgaggaaaaagacacttttttcttgctgttgtgcctgactaaggttagcattgaaccggtatctttctgatggctttgtccgcctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCGGGCAATTCGTGCGACAATCTGGACAGGAAGATCAGGCAGGCCAAGACG
species | Oryza sativa |
transcript | LOC_Os03g17570.5 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29642420|gb|CB647427.1|CB647427
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|86479881|gb|CI122514.1|CI122514
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|25778066|gb|CA752818.1|CA752818
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCATCTGCCCTCGGATCCGEST: gi|86482506|gb|CI125139.1|CI125139
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGC-GCCCTCGGATCCG
EST: CATTGAACGAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|218499020|gb|FG959222.1|FG959222
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGCAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29668908|gb|CB665183.1|CB665183
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGTTGAGCAGCGCCCTCGGATCCGCEST: gi|87029858|gb|CI274539.1|CI274539
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|88226911|gb|CI224679.1|CI224679
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29641357|gb|CB646364.1|CB646364
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|88198221|gb|CI198071.1|CI198071
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29642422|gb|CB647429.1|CB647429
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29617887|gb|CB622899.1|CB622899
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTCGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|86833914|gb|CI338285.1|CI338285
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGACCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|86479862|gb|CI122495.1|CI122495
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|8856605|gb|AU093923.1|AU093923
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAATTTCAGCCAGAACCGGAAAGTGAGGAACTTTGGAAAAAA- GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29661059|gb|CB657334.1|CB657334
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|88455358|gb|CI519379.1|CI519379
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGGTGAGCAGCGCCCTCGGATCCGCEST: gi|86524675|gb|CI164881.1|CI164881
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|86836725|gb|CI347351.1|CI347351
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|88246442|gb|CI246291.1|CI246291
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|84117030|gb|CD150797.1|CD150797
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|218484896|gb|FG966546.1|FG966546
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|86415638|gb|CI029649.1|CI029649
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCEST: gi|29623118|gb|CB628129.1|CB628129
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
ctaaggttagcattgaaccggtatctttctgatggctttgtccgcctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCGGGCAATTCGTGCGACAATCTGGACAGGAAGATCAGGCAGGCCAAGACG
ttctgat putative branch site (score: 3)
cctattttc putative PPT
tattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacttttgaggaaaaagacacttttttcttgctgttgtgcctgactaaggttagcattgaaccggtatctttctgatggctttgtccgcctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGCGGGCAATTCGTGCGACAATCTGGACAGGAAGATCAGGCAGGCCAAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA