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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgaatatcctgttgccgaacatcattccatgggatgtttctgaatggcatgctaagtttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 12
gtaagatgaat-atcctgttgccgaacatca---ttccatgggatgtt---tctgaatggcatgctaagtttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
| ||| || || ||   || ||    | |     |||||  |  ||     |||  |  |  | || |       | |||  || ||||||||||| ||||||||  | || || || ||||| |||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||| | ||||
gcaagttggattatatagtcgcaatgctttcgtcttccaaagcttggcaaatcttgactgattactga-cgcgattacttcaactttgcagTTGATTAACCCAGATATAACAGTGACGATGACCGAGAACACTCCTGATGATCCCCGCCAGAGGAAGCCGGACATCACCAAGGCAAAGGAAGTTCTAGGGT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G165357_T01 (Zea mays), 3'ss of exon 12
gtaagatgaatatcctgttgccgaacatcattccatgggatgtttctgaatggcatgctaagtttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
| ||| || ||    | |    | |     |||       |   |||  |  |    ||||  | |||   ||| || |||||||||||||||||||| || || || || ||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||| |||| |
gcaagttggattctatataatagcaatgttttcttcttcctaaatcttgacagatcactaacgtgccca--tttaactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATCCCCGCCAGAGGAAGCCGGACATCACAAAGGCGAAGGAAGTTCTGGGAT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA13G40960.1 (Glycine max), 3'ss of exon 13
----------------------------------------------gtaagatgaatatcctgt-tgccgaaca----tcattccatgggatgtt-----tctgaatggcatgct----aagtttccct-----gcttt-----taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
                                              ||    || || | | || | || |||     |||| |      |||||     | ||||||  |  ||    ||||||   |     | |||     |   |||||| | || || ||||  ||     |||  |||   |||||||||||||||||||| || || || || |||||||| ||||| ||||||||| | ||||| |
gtcagttttaagcatctttaaatataattgagctatttttcttaaggtggattgcatgttcagtgtaccaaaccaatttcatccatatttatgttgaaagtgtgaatgaaaatcttttcaagtttttgtttaatgttttgtgggtggtttgcagCTTATTAATCCAGGTGTGGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGCGACAAAGAAAACCAGACATCACAAAAGCAAAGGAATTGTTGGGCT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 12
---gtaagatgaatatcctgttgccgaac--atcattccatg--ggatgtttctgaatggcatgctaagtttccctgct--tttacct-------tgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
   |    |  ||| |  | |||   | |   |  ||  |||  |||  |||  |      |   | |  ||  ||  |  ||||  |       ||||| | ||||| ||| | ||     | |  |||  ||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| |  || | |
tgtggggaaaaaatgtttttttgtttaccttgtggtttaatgatggagcttttcgtgaaaaactttgaagttagctaatgctttatgtatggttgtgcagCTTATCAATCCAAAAGTGCAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGAGAT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA12G06980.3 (Glycine max), 3'ss of exon 12
-gtaagatgaat-atcctgttgccgaacatcat---tccatgggatgtttctgaatggcatgct---aagtttccc--tgctttt------accttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
  |   ||||   || ||||      || |  |   |  ||        | |   ||  |  ||   |||||  |   ||||||          |||||| | || || ||| | ||     | |  |||  ||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| |  |||| |
gatgtaatgagggattctgtgtttttaccttgtggattaataatgaaacttttggtgaaaaactttgaagttagctaatgctttatgtatggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGGGAT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA15G04500.1 (Glycine max), 3'ss of exon 13
----gtaagatgaatat--------cctgttgccgaacatcattccatgggatgtttctgaatggcatgctaagtt--tccctgctt--ttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
       |||| ||||         | | ||   |  ||   |   |  | |  |||  | | |   |  | | ||  | | |  |   |    || ||| | || || ||||  ||     |||  |||   ||||||||||||||||| || || || || || |||||||| ||||| ||||||||| | ||||| |
ttgtaccagatcaatacatttcacccatatttatgtgcaaagtgtgaaagaaaattttggcaagaagtttttatttgatgctttgtgggtggtttttcagCTTATTAATCCAGGTGTGGAGATCAAGATGGTGGAGAACACTCCTGATGACCCACGACAAAGAAAACCAGACATCACAAAAGCAAAGGAATTGTTGGGCT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagatgaatatcctgttgccgaacatcattccatgggatgtttctgaat-----ggcatgctaagtttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
      |||   ||  ||| |   | || ||   |     |  ||   |||     ||   |||||       |   ||||| |||||| |||| |||||     |     | |  |||  ||||||||| || ||||||||  | ||||||||||||||||| |||||||| || ||||| ||||| |
-----gtgagagtctggtttctcgatatgatatgagtaagtacttagaaattcttgggtccgctaatgaaatgttggtttac-ttgcagCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGAT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 12
------------------------------------------------------------------------------------------------------------gtaaga-tgaatatcctgttgccgaacatcattccatgggatgtttctgaatggca-tgctaagtttccctgctt---ttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
                                                                                                             ||| |   || ||  | ||    | ||| |    |||  |  |||     |||||   ||||   |    | ||   | | | ||||| | ||||||||  |||||    |||  |||   || ||||| || || |||||||| ||||||||||||||||| ||||||||||||||  |  |||| |
gtgagtactatatttgcctctttttttcttttttaattagcaatatctggttcctttggcccaaattaaatccatcttctctgcaatttccaaacattaccatgagatataaaagcaaaaattatattaaaaatcatgagaatatgaaagatttggatgtggcagctctaatacttggagattaattgaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGATCCTCGCCAGAGGAAGCCAGACATCACAAAGGCAAAGGAGTTGCTGGGAT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 12
----------------gtaagatgaatatcctgttgccgaacatcattccatgggatgtttctgaatggcatgctaagt-ttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
                || | ||  | |   | |      |  | | |   |    ||  ||||| |||  || ||| |  |   ||  |  |  |||||| | || || || |||||     | | ||||   || ||||||||||||||||| || |||||||| ||||||||| | ||||| || ||| | || || |
gaattcaaacatggttgtgaaatacagaggatttcaattcagttgagttgttattttggctctga-tggattgataaatgcttaatggctcgatgttgcagCTAATTAATCCTGAGGTGGTGATAAAAATGGTAGATAACACTCCTGATGATCCACGACAGAGGAAACCAGACATTTCTAAGGCTAAAGAATTGTTAGGAT

upper sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 11
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------gtaagatgaatatcctgttgccgaacatcattccatgggatgtttctgaatggcatgctaagtttccctgctt------ttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
           |     |  || | || ||  |     |  |      |  || | |    |   |   |   | ||     ||      | |  |||||| ||||| | ||    |        | |||   |||||||||||| |||||||||||| || |||| |||||||| || ||||| |   |  || | ||||
tattcatggcagctttgtagattttctattttctcttct-gtagagaagagtgctaccatttaagactgttgatgtctgaatttggttgatcaaattgcagCTGATCGAGCCTTCTGCGGAGACTAAAATCGTTGAGAACACTCCCGATGATCCTCGTAAGCGGAAACCAGACATCACTAAGGCTACTAAGCTTCTTGGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86852342|gb|CI319277.1|CI319277
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89186937|gb|CI053340.1|CI053340
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88987937|gb|CI017999.1|CI017999
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|15852706|gb|BI805502.1|BI805502
EST:     GAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88251990|gb|CI350418.1|CI350418
EST:     CAGGTGAATTCACCATGC-GGGACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86253045|gb|CI057970.1|CI057970
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89176626|gb|CI111342.1|CI111342
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86487211|gb|CI129844.1|CI129844
EST:     CCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86252444|gb|CI056181.1|CI056181
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|38477586|gb|CF961719.1|CF961719
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88297272|gb|CI545362.1|CI545362
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTNACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|33813745|gb|CF332759.1|CF332759
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCCTGATGA
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACT-CCTGATGA
EST: gi|88981021|gb|CI021148.1|CI021148
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|58684041|gb|CK072728.1|CK072728
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88843161|gb|CI372061.1|CI372061
EST:     TTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: TTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|8859289|gb|AU096607.1|AU096607
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86257228|gb|CI004046.1|CI004046
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|87035716|gb|CI190338.1|CI190338
EST:     CCCAGGTGAATTCACTATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88219481|gb|CI219041.1|CI219041
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|30226654|gb|CB964546.1|CB964546
EST:     CATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89179048|gb|CI043553.1|CI043553
EST:     GGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86425774|gb|CI070871.1|CI070871
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86491791|gb|CI134424.1|CI134424
EST:     AAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTGACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: AAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86834119|gb|CI340258.1|CI340258
EST:     GAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|87034699|gb|CI189323.1|CI189323
EST:     CATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86603485|gb|CI112245.1|CI112245
EST:     CTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88274446|gb|CI394852.1|CI394852
EST:     AGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: AGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89186897|gb|CI053300.1|CI053300
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|87034463|gb|CI189087.1|CI189087
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|30227944|gb|CB965836.1|CB965836
EST:     CACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86852460|gb|CI320385.1|CI320385
EST:     GTGAATTCACCA-GCTGGAACTTGGCTGAGAATGTGAAGGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGATAACACTCCTGATGA
genomic: GTGAATTCACCATGCTGGAACTT-GCTGAGAATGTGAA-GGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGA
EST: gi|88987315|gb|CI034282.1|CI034282
EST:     ACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACCATGACTGAGAACACTCCTGATGAT
genomic: ACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89194251|gb|CI116688.1|CI116688
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88845155|gb|CI084080.1|CI084080
EST:     GAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTNACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86258634|gb|CI064987.1|CI064987
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88973011|gb|CI019630.1|CI019630
EST:     ATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: ATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86904678|gb|CI321586.1|CI321586
EST:     GAATTCACCCATGCCTGGAACTGGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGGTTACCGTCACAATGACTGAGAACACTCCTGATGA
genomic: GAATTCA-CCATG-CTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGA-GGTTACCGTCACAATGACTGAGAACACTCCTGATGA
EST: gi|88966038|gb|CI012925.1|CI012925
EST:     TTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: TTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88839265|gb|CI000737.1|CI000737
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89184610|gb|CI007035.1|CI007035
EST:     ATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGGACACTCCTGATGAT
genomic: ATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86259156|gb|CI010457.1|CI010457
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86539355|gb|CI179561.1|CI179561
EST:     TGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGTACACTCCTGATGAT
genomic: TGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88842044|gb|CI081300.1|CI081300
EST:     ACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTNACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: ACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|15853120|gb|BI805916.1|BI805916
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGG-TACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|58607978|gb|CK036011.1|CK036011
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86544573|gb|CI184779.1|CI184779
EST:     ATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGTACACTCCTGATGAT
genomic: ATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|4968619|gb|AU065523.1|AU065523
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88841372|gb|CI005452.1|CI005452
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|14191782|gb|AU183993.1|AU183993
EST:     CACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|94362093|gb|CI052892.1|CI052892
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86543097|gb|CI183303.1|CI183303
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|87018890|gb|CI256775.1|CI256775
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88202936|gb|CI200788.1|CI200788
EST:     CCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89189451|gb|CI048990.1|CI048990
EST:     CAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89167947|gb|CI109151.1|CI109151
EST:     TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTNACCGTCACAACGACTGAGAACACTCCTGATGAT
genomic: TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|58613250|gb|CK040962.1|CK040962
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88837252|gb|CI078612.1|CI078612
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|14981709|gb|BI306387.1|BI306387
EST:     CACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|33680607|gb|CF308846.1|CF308846
EST:     GTGAATTCACCATGCCGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89170437|gb|CI039714.1|CI039714
EST:     GGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86901883|gb|CI298530.1|CI298530
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86254397|gb|CI059124.1|CI059124
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|87018932|gb|CI256817.1|CI256817
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88218647|gb|CI218496.1|CI218496
EST:     TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86596658|gb|CI286571.1|CI286571
EST:     AGAATGTG-AGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: AGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86413172|gb|CI067577.1|CI067577
EST:     ATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: ATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|13896507|gb|AU182843.1|AU182843
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88831995|gb|CI014554.1|CI014554
EST:     CCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: CCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88268467|gb|CI378402.1|CI378402
EST:     TGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: TGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86250768|gb|CI007631.1|CI007631
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86420903|gb|CI056892.1|CI056892
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|89174852|gb|CI111050.1|CI111050
EST:     GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|88264656|gb|CI368430.1|CI368430
EST:     TTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: TTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86436280|gb|CI118002.1|CI118002
EST:     GAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|86491439|gb|CI134072.1|CI134072
EST:     GAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: GAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
EST: gi|14981252|gb|BI305930.1|BI305930
EST:     TCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG                         TTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT
genomic: TCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgtaagatgaa ... taccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccatgggatgtttctgaatggcatgctaagtttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT
                                 tttccctgcttttacc  CT-rich tract
                             taagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatgaatatcctgttgccgaacatcattccatgggatgtttctgaatggcatgctaagtttccctgcttttaccttgcagTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCTGATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA