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...attttataacaacgtataattaggtcttacattagcagacttcactattttattttttaacatcaagtcctaatatctcatctatcttcaatcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGCTGCAAAAGGCCTGGCTTATTTGCATCATGATTGTTCACCTCGAATAAT
species | Oryza sativa |
transcript | LOC_Os03g16010.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATG AAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGEST: gi|29625253|gb|CB630264.1|CB630264
genomic: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATGgtgagcatgt ... atcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAG
EST: ATATATGACTATCTTCC-GGTGGAAACCTAGATGAGGTGCTACATG AAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGEST: gi|58656288|gb|CK044968.1|CK044968
genomic: ATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATGgtgagcatgt ... atcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAG
EST: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATG AAAAATCTGAACAGTTGEST: gi|27554522|gb|CA998422.1|CA998422
genomic: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATGgtgagcatgt ... atcttgacagAAAAATCTGAACAGTTG
EST: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATG AAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGEST: gi|33675519|gb|CF303758.1|CF303758
genomic: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATGgtgagcatgt ... atcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAG
EST: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATG AAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGEST: gi|87005327|gb|CI285549.1|CI285549
genomic: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATGgtgagcatgt ... atcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAG
EST: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATG AAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAG
genomic: ATTGATATATGACTATCTTCCAGGTGGAAACCTAGATGAGGTGCTACATGgtgagcatgt ... atcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAG
tattttattttttaacatcaagtcctaatatctcatctatcttcaatcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGCTGCAAAAGGCCTGGCTTATTTGCATCATGATTGTTCACCTCGAATAAT
tcctaat putative branch site (score: 52)
tattttttaacatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttataacaacgtataattaggtcttacattagcagacttcactattttattttttaacatcaagtcctaatatctcatctatcttcaatcttgacagAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGCTGCAAAAGGCCTGGCTTATTTGCATCATGATTGTTCACCTCGAATAAT
- - - -aacaacg
- - - - - - - - - - - - -cttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca