1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttacggtgtatcatatattcatatgtaacatttgaggatttctatttcttaaaaggctatattgctacttatttgagatattggatttcgcttttccagAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCCATGTGTTGTCCCTCGCG
species | Oryza sativa |
transcript | LOC_Os03g14990.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGAAATTATATACTTCAGAGTAGCTTTCAAGCCAACCGCGACTATTGGG AAGAAACAACATACTGEST: gi|218505480|gb|FG952712.1|FG952712
genomic: GTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGgtgagatatt ... gcttttccagAAGAAACAACATACTG
EST: GTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGG AAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCA
genomic: GTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGgtgagatatt ... gcttttccagAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCA
tttcttaaaaggctatattgctacttatttgagatattggatttcgcttttccagAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCCATGTGTTGTCCCTCGCG
tttcgcttttcc CT-rich tract
ttatttgagatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacggtgtatcatatattcatatgtaacatttgaggatttctatttcttaaaaggctatattgctacttatttgagatattggatttcgcttttccagAAGAAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCCATGTGTTGTCCCTCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - gtgtatc
- - - - - - - - - - catatgt
- - - - - - - - - - - - - - acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact