1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaatgtcagttttttccccttgaaattttttgaagttttaatgcccccatttatgatgcttgtttccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTACAAGTCATTTGTTAGTGAATACCCAATTGTCTCGATCGAAGACCCATTTG
species | Oryza sativa |
transcript | LOC_Os03g14450.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTTCTACACTGAGGACCAAACCTATGATCTTAACTTCAAGGAAGAG AACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTACEST: gi|29678594|gb|CB674869.1|CB674869
genomic: CAGAGTTCTACACTGAGGACCAAACCTATGATCTTAACTTCAAGGAAGAGgtaaatgtca ... ccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTAC
EST: CAGAGTTCTACACTGAGGACCAAACCTATGATCTTAACTTCAAGGAAGAG AACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTACEST: gi|218503770|gb|FG954179.1|FG954179
genomic: CAGAGTTCTACACTGAGGACCAAACCTATGATCTTAACTTCAAGGAAGAGgtaaatgtca ... ccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTAC
EST: AGAG-TCTACACTGAGGAGCAAACCTATGATCTTAACTTCAAGGGAAGAG AACAATGACGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTAEST: gi|2797284|gb|AA750578.1|AA750578
genomic: AGAGTTCTACACTGAGGACCAAACCTATGATCTTAACTTCAA-GGAAGAGgtaaatgtca ... ccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTA
EST: CTTAACTTCAAGGAAGAG AACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTAC
genomic: CTTAACTTCAAGGAAGAGgtaaatgtca ... ccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTAC
tgaaattttttgaagttttaatgcccccatttatgatgcttgtttccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTACAAGTCATTTGTTAGTGAATACCCAATTGTCTCGATCGAAGACCCATTTG
ttttaat putative branch site (score: 3)
cttgtttccttgttt putative PPT
ttttttgaagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtcagttttttccccttgaaattttttgaagttttaatgcccccatttatgatgcttgtttccttgtttagAACAATGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAATGTGTACAAGTCATTTGTTAGTGAATACCCAATTGTCTCGATCGAAGACCCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA