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gtcagtcacagtttgatatttcagaatcttgctcctgtcacttctcctttctactgcgagcaacagggatcatgctaacagtactgttctcatcaccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGATCGATGTCA
species | Oryza sativa |
transcript | LOC_Os03g11734.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAG CTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTEST: gi|218504647|gb|FG960764.1|FG960764
genomic: CCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAGgtcagtcaca ... caccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCT
EST: CCAAGAATGATAAAGGCAAGGTGGTTGTTGCGACATCTCGTGTACTACAG CTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGEST: gi|86497553|gb|CI140186.1|CI140186
genomic: CCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAGgtcagtcaca ... caccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATG
EST: CGTGTACTACAG CTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGEST: gi|86495252|gb|CI137885.1|CI137885
genomic: CGTGTACTACAGgtcagtcaca ... caccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATG
EST: CCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAG CTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATG
genomic: CCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAGgtcagtcaca ... caccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATG
ttctactgcgagcaacagggatcatgctaacagtactgttctcatcaccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGATCGATGTCA
tgctaac putative branch site (score: 15)
ttctcatc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcacagtttgatatttcagaatcttgctcctgtcacttctcctttctactgcgagcaacagggatcatgctaacagtactgttctcatcaccttgcagCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGATCGATGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA