1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcttcagttcaactttgtgcagattctaggctttagttttctacatgcctaagattgctatttaagctgtgcctaagattgttggtctcaattgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGA
species | Oryza sativa |
transcript | LOC_Os03g11540.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|58681419|gb|CK070106.1|CK070106
genomic: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: GAGGATTGTTGGCTGCAAGTGCAGATGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|25806891|gb|CA762852.1|CA762852
genomic: GAGGATTGTTGGCTGCA-GTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: AGAGGATTGTTGGNTGCAGTGCAGACGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|66912695|gb|CX099543.1|CX099543
genomic: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: AGGATTGTTGGCTGCAGTGCAGACGAGCTTGATCCGGATTCAG-AAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCEST: gi|58666112|gb|CK054798.1|CK054798
genomic: AGGATTGTTGGCTGCAGTGCAGATGAGCTTGATC-GGATT-AGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCC
EST: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|89169084|gb|CI020624.1|CI020624
genomic: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|88250909|gb|CI248760.1|CI248760
genomic: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: GTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|163920065|gb|EG709847.1|EG709847
genomic: GTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: AGAGGATTGTTGGCTGCAGTGCAGACGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTEST: gi|86495835|gb|CI138468.1|CI138468
genomic: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
EST: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAG GAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
genomic: AGAGGATTGTTGGCTGCAGTGCAGATGAGCTTGATCGGATTAGGAAGGAGgtaattttgc ... attgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCT
tgcctaagattgctatttaagctgtgcctaagattgttggtctcaattgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGA
ttgtttc CT-rich tract
tatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttcagttcaactttgtgcagattctaggctttagttttctacatgcctaagattgctatttaagctgtgcctaagattgttggtctcaattgtttcagGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGA
gcttcag
- - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgttg