1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taatctgaattgtcctgcatggcagcatctgttttatttgttcttttggttgacccactacgattgctgagttagtgacgtgtgtttaaattctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGCATCTTACTCATTTTTCGCGGAAGAGAAGCATGCTGTCATCAAAGAAGC
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|29628808|gb|CB633819.1|CB633819
genomic: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|58592425|gb|CF990733.1|CF990733
genomic: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|218489463|gb|FG957652.1|FG957652
genomic: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTATAGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|29625008|gb|CB630019.1|CB630019
genomic: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
genomic: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
ttggttgacccactacgattgctgagttagtgacgtgtgtttaaattctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGCATCTTACTCATTTTTCGCGGAAGAGAAGCATGCTGTCATCAAAGAAGC
ggttgac putative branch site (score: 29)
ttctctac putative PPT
tgtttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatctgaattgtcctgcatggcagcatctgttttatttgttcttttggttgacccactacgattgctgagttagtgacgtgtgtttaaattctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGCATCTTACTCATTTTTCGCGGAAGAGAAGCATGCTGTCATCAAAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - -tgcatgg
- - - - - - - - - - - cagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt