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gtatgctcttaagactaagtgatatttctctttatttatatttcccagtatttcatggttattatcctcgaatatatataatccaacacccttgcagaaaatacaaggtttgcacactagtattgtgaacctggaggttgggttttcctatggtatgactagacaacctagcatataatttgtcaactatgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAAAGCCAGTTTTTGCAAGGATAGAAACAGAGACGGACGAGAAAGATCAAT
species | Oryza sativa |
transcript | LOC_Os03g11120.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|29679026|gb|CB675301.1|CB675301
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TCT-T-CACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|218481368|gb|FG954011.1|FG954011
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|66921964|gb|CX108812.1|CX108812
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTAATACACAGCTTGGTTTCACAGAAGACCNATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCTEST: gi|88971445|gb|CI017759.1|CI017759
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|29619404|gb|CB624416.1|CB624416
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|86501405|gb|CI144038.1|CI144038
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|88974217|gb|CI019890.1|CI019890
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG AAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|88250003|gb|CI249852.1|CI249852
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: GTTTCACAGAAGACCCATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|58685168|gb|CK073855.1|CK073855
genomic: GTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAEST: gi|58030610|gb|CX728153.1|CX728153
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
EST: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGG GAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
genomic: TTTATACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGgtatgctctt ... tgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCA
ttcctatggtatgactagacaacctagcatataatttgtcaactatgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAAAGCCAGTTTTTGCAAGGATAGAAACAGAGACGGACGAGAAAGATCAAT
atataatttgtcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcttaagactaagtgatatttctctttatttatatttcccagtatttcatggttattatcctcgaatatatataatccaacacccttgcagaaaatacaaggtttgcacactagtattgtgaacctggaggttgggttttcctatggtatgactagacaacctagcatataatttgtcaactatgccctgcagGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTCAGGTAATGATGGAGCCAAAGCCAGTTTTTGCAAGGATAGAAACAGAGACGGACGAGAAAGATCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA