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...gttattgatttgccatatctgttacacagttggactcgattttacagtagctaacttcacactcacttttccttatacatttgccttgtgtttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATGACAATGAGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACT
species | Oryza sativa |
transcript | LOC_Os03g01750.5 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTACCT GAAGGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAEST: gi|24208785|gb|AU225812.1|AU225812
genomic: AACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAA-GGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAA
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|29656092|gb|CB652367.1|CB652367
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|88311093|gb|CI658006.1|CI658006
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|58688312|gb|CK076999.1|CK076999
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|2428616|gb|C73079.1|C73079
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|29626840|gb|CB631851.1|CB631851
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|58696174|gb|CK084861.1|CK084861
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|58694687|gb|CK083374.1|CK083374
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|29656147|gb|CB652422.1|CB652422
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGGCATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
agtagctaacttcacactcacttttccttatacatttgccttgtgtttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATGACAATGAGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACT
cactcac putative branch site (score: 2)
tgtttccc putative PPT
ttatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattgatttgccatatctgttacacagttggactcgattttacagtagctaacttcacactcacttttccttatacatttgccttgtgtttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATGACAATGAGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - tgccata
- - - - - - - - - ctgttac
- - - - - - - - - - - - - - - - - - - - - - cagtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc