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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgtttaatcttttttctcaattgcttgttagcttgcattgtaggctatatttttatttctctttccaccttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAAAACCTACTGAGAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAG

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47220.2 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G178822_T01 (Zea mays), 3'ss of exon 17
gtaatatgtttaatcttttttctcaattgcttgttagcttgcattgtaggctatatttt-------tatttctctttccacc-ttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAAAACCTACTGAGAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAG
|||   |  |||    |||| ||         |  |||  |   |  ||| | || |||       ||||||  || ||| | || ||||||||||||||||||||||  ||||||||||| | || ||||||| || |||||| || ||||  |  ||||| ||| | || ||||| || || ||  |
gtatgtttcttatgtgttttacttgggctggagcaagcaagatctacagggtttagtttgatcgtctatttcgtttaccaacattacagGTGTACAAAGAAAACTTCACTTGGATCGTCAGCCACCGCAGAAGAGTACAAAACCGACCGAGAACAGCAATAAGCTAGCTACAAATCGGGTCCCAGCCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58683626|gb|CK072313.1|CK072313
EST:     CAAACCTCATAGTAATGCATCTCTGAAATCAAGTGGCTTATCTAAGACCG                         GTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
genomic: CAAACCTCATAGTAATGCATCTCTGAAATCAAGTGGCTTATCTAAGACCGgtaatatgtt ... caccttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
EST: gi|117220171|gb|CT852510.1|CT852510
EST:     ATCTAAGACCG                         GTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
genomic: ATCTAAGACCGgtaatatgtt ... caccttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
EST: gi|58673432|gb|CK062118.1|CK062118
EST:     GGCTTATCTAAGACCG                         GTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
genomic: GGCTTATCTAAGACCGgtaatatgtt ... caccttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
EST: gi|163918501|gb|EG711431.1|EG711431
EST:     CAAACCTCATAGTAATGCATCTCTGAAATCAAGTGGCTTATCTAAGACCG                         GTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA
genomic: CAAACCTCATAGTAATGCATCTCTGAAATCAAGTGGCTTATCTAAGACCGgtaatatgtt ... caccttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttgttagcttgcattgtaggctatatttttatttctctttccaccttccagGTGTACAAAGAAAACTTCAAATGGATCGTCAGGCGCCACAGAAGATTAAAAAACCTACTGAGAGTAATAATAAACTAACCACTAATCGAGTACCTGCAAG
                        ctatatttttatttct  CT-rich tract
                         tatatttttatttctc  TA-rich tract