1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tgttcttcaataactgttgctttgccgtctttcaagatgtctcccaactataattgcgtacagttgcgacaattagttttctttaatgtgcttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTCGTCATGTCCAAGATAATGCTGCTAGGAGTTTCTGTCGCGAGCTTGCTA
species | Oryza sativa |
transcript | LOC_Os02g45070.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAAGGATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAG AAAATGGTCAATGGTGEST: gi|29669479|gb|CB665754.1|CB665754
genomic: GAGAGAAGGATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAGgtatggtttt ... cttgttgcagAAAATGGTCAATGGTG
EST: AGAGAAAGATGTCTTGCCAAGAATTTGGCCA-TGGAATATGATGAATAAG AAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTEST: gi|58661798|gb|CK050478.1|CK050478
genomic: AGAGAAGGATGTCTTGCCAAGAATT-GGCCAATGGAATATGATGAATAAGgtatggtttt ... cttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCT
EST: GAGAGAAGGATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAG AAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTEST: gi|58653440|gb|CK042120.1|CK042120
genomic: GAGAGAAGGATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAGgtatggtttt ... cttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCT
EST: GATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAG AAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTEST: gi|87023576|gb|CI286327.1|CI286327
genomic: GATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAGgtatggtttt ... cttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCT
EST: TTGCCAAGAATTGGCCAATGGAATATGATGAATAAG AAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTEST: gi|58669642|gb|CK058328.1|CK058328
genomic: TTGCCAAGAATTGGCCAATGGAATATGATGAATAAGgtatggtttt ... cttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCT
EST: GAGAGAAGGATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAG AAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCT
genomic: GAGAGAAGGATGTCTTGCCAAGAATTGGCCAATGGAATATGATGAATAAGgtatggtttt ... cttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCT
aactataattgcgtacagttgcgacaattagttttctttaatgtgcttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTCGTCATGTCCAAGATAATGCTGCTAGGAGTTTCTGTCGCGAGCTTGCTA
ctttaat putative branch site (score: 42)
aattagttttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcttcaataactgttgctttgccgtctttcaagatgtctcccaactataattgcgtacagttgcgacaattagttttctttaatgtgcttgttgcagAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATCAATTTTTCTCGTCATGTCCAAGATAATGCTGCTAGGAGTTTCTGTCGCGAGCTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
tgttctt
- - - -caataac
- - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagttgc