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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaagaatcaaacatctatcattttgagcattcaaaaacattctgggatatagtgcaagtatgatatgatttatgctgagcctattatgttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG

Basic information

species Oryza sativa
transcript LOC_Os02g41590.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 11
-----ataaagaatcaaacatctatcattttgagcattcaaaaacattctgggatatagtgc-aagtatgatatgatttatgctgagcctattatgttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG
          |||| ||  |   || || |    |||   ||    |||| | |     ||   |||||||  |    ||| || |  ||||||||||| | |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
cttgatctttgaatgaagaactgatgatatctgccatctcaag-tgttcttgtacgagttgttgagtatgacgta---tatactaa--ctattatgttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCAACGGCGCAG

upper sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G540538_T01 (Zea mays), 3'ss of exon 11
ataaagaatcaaacatctatcatt---ttgagcattcaaa---aacattctgggatatagtgca-agtatgatatgatttatgctgagcctattatgttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG
        |  ||| | | |  ||   |  || | | | |    ||||  |  |   |  || | ||  || |  |  | |||       ||||||| || | |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
-------ttttaacttttgtgcttgaatgaagaactgatatctgacatcttaagtgtttttgtagaggctgttgagtatgatgtactaattattatgctgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCAACGGCGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88465830|gb|CI524780.1|CI524780
EST:     TCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: TCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86834375|gb|CI341284.1|CI341284
EST:     CCGTGATTACTCAAGGTGCTGATCCACTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|38482919|gb|CF966721.1|CF966721
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88216132|gb|CI215981.1|CI215981
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33653981|gb|CF276595.1|CF276595
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33690915|gb|CF319154.1|CF319154
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|87006970|gb|CI275278.1|CI275278
EST:     CCGTGATTACTCAAGGTCCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACAC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATT-CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACAC
EST: gi|27578125|gb|CB000820.1|CB000820
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|89167316|gb|CI252847.1|CI252847
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|24468820|gb|CA305769.1|CA305769
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88980836|gb|CI022526.1|CI022526
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86420865|gb|CI056854.1|CI056854
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|87026580|gb|CI252534.1|CI252534
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88725620|gb|CI748879.1|CI748879
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|58600653|gb|CK011181.1|CK011181
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|300215864|gb|HO088490.1|HO088490
EST:     CTGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88983145|gb|CI020709.1|CI020709
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86494084|gb|CI136717.1|CI136717
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86834377|gb|CI341286.1|CI341286
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86427447|gb|CI072544.1|CI072544
EST:     TCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: TCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88264879|gb|CI367530.1|CI367530
EST:     TCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: TCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86511587|gb|CI154220.1|CI154220
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88241191|gb|CI241040.1|CI241040
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88206348|gb|CI206197.1|CI206197
EST:     CCGTGATTACTCAAGGTGCTGATCCAGCAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88995532|gb|CI022855.1|CI022855
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|9866041|gb|AU101791.1|AU101791
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|55408547|gb|CV720923.1|CV720923
EST:     CTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33800932|gb|CF326339.1|CF326339
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88518438|gb|CI446092.1|CI446092
EST:     AGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: AGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88262425|gb|CI366199.1|CI366199
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33812141|gb|CF331960.1|CF331960
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88442170|gb|CI560411.1|CI560411
EST:     TCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: TCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88847409|gb|CI015902.1|CI015902
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88993161|gb|CI108789.1|CI108789
EST:     CGTGATTACTCAAGGTGCTGGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTTGTTGACAC
genomic: CGTGATTACTCAAGGTGCT-GATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGC-TTGTTGACAC
EST: gi|89199046|gb|CI253120.1|CI253120
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|30227286|gb|CB965178.1|CB965178
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88241275|gb|CI241124.1|CI241124
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88974437|gb|CI021978.1|CI021978
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88852687|gb|CI008880.1|CI008880
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|89175912|gb|CI042933.1|CI042933
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86253196|gb|CI058121.1|CI058121
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88966149|gb|CI013025.1|CI013025
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|89176982|gb|CI111182.1|CI111182
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86417957|gb|CI032166.1|CI032166
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88845212|gb|CI084137.1|CI084137
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88241201|gb|CI241050.1|CI241050
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33681208|gb|CF309447.1|CF309447
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88258247|gb|CI360833.1|CI360833
EST:     ATTACTC-AGTTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: ATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86506822|gb|CI149455.1|CI149455
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|66922324|gb|CX109172.1|CX109172
EST:     CTGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33805852|gb|CF328805.1|CF328805
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86601408|gb|CI253736.1|CI253736
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86538179|gb|CI178385.1|CI178385
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88844873|gb|CI022227.1|CI022227
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86491265|gb|CI133898.1|CI133898
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88844636|gb|CI021211.1|CI021211
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGCCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33682685|gb|CF310924.1|CF310924
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88992803|gb|CI035765.1|CI035765
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86428609|gb|CI075290.1|CI075290
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTNGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGTGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33820776|gb|CF336193.1|CF336193
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACAC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATT-CCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACAC
EST: gi|86523181|gb|CI163387.1|CI163387
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|89168834|gb|CI020915.1|CI020915
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|38473896|gb|CF958028.1|CF958028
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33681078|gb|CF309317.1|CF309317
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88241182|gb|CI241031.1|CI241031
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88201675|gb|CI202030.1|CI202030
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88200328|gb|CI200178.1|CI200178
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86873826|gb|CI341259.1|CI341259
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33818911|gb|CF335280.1|CF335280
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCNCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACAC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCC-CTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACAC
EST: gi|88220619|gb|CI220179.1|CI220179
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88225942|gb|CI225858.1|CI225858
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|33654124|gb|CF276738.1|CF276738
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88273681|gb|CI394087.1|CI394087
EST:     CGTGATTAGCTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CGTGATTA-CTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86838635|gb|CI329129.1|CI329129
EST:     TGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: TGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86488463|gb|CI131096.1|CI131096
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88904132|gb|CI006365.1|CI006365
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88974187|gb|CI002806.1|CI002806
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|88969274|gb|CI382823.1|CI382823
EST:     TGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: TGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
EST: gi|86427222|gb|CI072319.1|CI072319
EST:     CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAG                         GTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC
genomic: CCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 50 (upstream exon), 54 (downstream exon)
Score: 159

GTTGAAGATTTCCCAGCTTCCATTGGCCTCTGGAAAACAAAAGAGGATTGCCGTGATTACTCAAGGTGCTGATCCAGTAGTTGTCGCTGAGGATGGACAGgtatgcatct ... ttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggatatagtgcaagtatgatatgatttatgctgagcctattatgttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG
               tatgatatgatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataaagaatcaaacatctatcattttgagcattcaaaaacattctgggatatagtgcaagtatgatatgatttatgctgagcctattatgttgctgatagGTGAAAACATTCCCTGTGATCCTACTGCCAAAGGAGAAGCTTGTTGACACCAATGGCGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
ataaagaa
- - - - tcaaaca
- - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg