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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaattacttgcatgcattctttttttgtaggaatatctgccaagtcgtccttcactggaaactttcgtacctgactgtgatgtcctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAACTATTTGTAGTATACCAA

Basic information

species Oryza sativa
transcript LOC_Os02g40830.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40830.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G064695_T04 (Zea mays), 3'ss of exon 12
gtaaaaattacttgcatgcattctttttttgtaggaatatctgccaagtcgtccttcactggaaactttcgtacctgactgtgatgtcctgtt------gcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAACTATTTGTAGTATACCAA
|    ||   |||    |  | | | || |   |   |   | |    | ||  |   ||| |||| | ||    |   ||  || |  | ||      |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||                      
gccctaacagctttttagtttacatgttctaacgacgtgctttctgctttgttgt---ctgaaaacatacgcgtttatttgcaatattttatttatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGAAAGCTGTAAAAGCATCCGTCAAATAA----------------------

upper sequence: LOC_Os02g40830.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G064695_T02 (Zea mays), 3'ss of exon 11
gtaaaaattacttgcatgcattctttttttgtaggaatatctgccaagtcgtccttcactggaaactttcgtacctgactgtgatgtcctgtt------gcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAA-----CTATTTGTAGTATACCAA
|    ||   |||    |  | | | || |   |   |   | |    | ||  |   ||| |||| | ||    |   ||  || |  | ||      |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||      | || || ||| |     
gccctaacagctttttagtttacatgttctaacgacgtgctttctgctttgttgt---ctgaaaacatacgcgtttatttgcaatattttatttatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGAAAGCTGTAAAAGCATCCGTCAAATAACTAGTGTATCAATCTGAAGTTT-----

upper sequence: LOC_Os02g40830.1 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv07s0005g03790.t01 (Vitis vinifera), 3'ss of exon 11
----gtaaaaattacttgcatgcattctttttttgtaggaatatctgccaagtcgtccttcactggaaactttcgtacctgactgtgat-----gtcctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAACTATTTGTAGTATACCAA
     |  |||    ||| ||| | |    |||  |  || | | | | ||   |      | |   ||   |  |||  |    ||||      |  | |||||||||||||||||| | || || || ||||| ||||| |||||||| ||||||||||| || |||||||| |  |  |  | |          ||    |  
gtaaatgcaaaacctttggatggaattcaatttatttcgagtgtttccaaaaaggaaaaaaaatcagaaacataatacgagttgttgatcacaaatgatattgcagGAAAGTGGAATGGCATTGATAACAGCAGAAGATCTGGATGATGCAGCTGAGAAAGCCGTTAAAGCATCAGGAACCTGTTGAGGATGCCACTGTTGGTCCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58589675|gb|CF987983.1|CF987983
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|89193215|gb|CI050513.1|CI050513
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCCAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88837352|gb|CI078712.1|CI078712
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86827774|gb|CI272963.1|CI272963
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|33688589|gb|CF316828.1|CF316828
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGCCCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88295833|gb|CI532794.1|CI532794
EST:     ACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: ACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86485479|gb|CI128112.1|CI128112
EST:     CACCAATGTTGACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: CACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|218478127|gb|FG953382.1|FG953382
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|7378380|gb|AU088651.1|AU088651
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88199683|gb|CI199533.1|CI199533
EST:     GGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: GGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88994140|gb|CI116104.1|CI116104
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86489114|gb|CI131747.1|CI131747
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86433736|gb|CI094079.1|CI094079
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|29632940|gb|CB637949.1|CB637949
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88906319|gb|CI375391.1|CI375391
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88513774|gb|CI441280.1|CI441280
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88263204|gb|CI366978.1|CI366978
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88994236|gb|CI116200.1|CI116200
EST:     TGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGA
genomic: TGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATT-CTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGA
EST: gi|86821045|gb|CI357710.1|CI357710
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88852385|gb|CI374153.1|CI374153
EST:     AGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: AGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86435023|gb|CI106256.1|CI106256
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCTAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86414099|gb|CI068502.1|CI068502
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86492263|gb|CI134896.1|CI134896
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86260441|gb|CI066314.1|CI066314
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88250954|gb|CI349184.1|CI349184
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88247971|gb|CI247820.1|CI247820
EST:     TGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58658521|gb|CK047201.1|CK047201
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86841053|gb|CI342839.1|CI342839
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86835409|gb|CI347866.1|CI347866
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88989804|gb|CI107491.1|CI107491
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86863598|gb|CI345277.1|CI345277
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86484646|gb|CI127279.1|CI127279
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|29662329|gb|CB658604.1|CB658604
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88270478|gb|CI385736.1|CI385736
EST:     TGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTACTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGA
genomic: TGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATT-CTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGA
EST: gi|89192947|gb|CI050245.1|CI050245
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88837962|gb|CI371540.1|CI371540
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86415306|gb|CI069709.1|CI069709
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86843485|gb|CI339552.1|CI339552
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58689592|gb|CK078279.1|CK078279
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86832419|gb|CI342073.1|CI342073
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88382479|gb|CI535687.1|CI535687
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86851620|gb|CI315198.1|CI315198
EST:     TGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCCAGAGGATCTTGATGATGCGGCTGA
genomic: TGTTCGGTTGGAAGGCACCAATGTTGACCAA-GGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTG-CAGAGGATCTTGATGATGCGGCTGA
EST: gi|88261239|gb|CI364815.1|CI364815
EST:     GTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: GTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88964277|gb|CI045470.1|CI045470
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86600560|gb|CI356317.1|CI356317
EST:     AGAGGATTCTAAAG                         GAAACTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: AGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88472169|gb|CI409440.1|CI409440
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86487662|gb|CI130295.1|CI130295
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58679486|gb|CK068173.1|CK068173
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88839145|gb|CI378069.1|CI378069
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58591129|gb|CF989437.1|CF989437
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTG
EST: gi|88245278|gb|CI245127.1|CI245127
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88375066|gb|CI523331.1|CI523331
EST:     CACCAATGTTGACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: CACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88264702|gb|CI368476.1|CI368476
EST:     CCAATTTTGACCAAGGGAAGAGGATTCTAAAG                         GAAGGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: CCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88446520|gb|CI536551.1|CI536551
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88908048|gb|CI090644.1|CI090644
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88907067|gb|CI376139.1|CI376139
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86488865|gb|CI131498.1|CI131498
EST:     ACCAATGTTGACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: ACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86867753|gb|CI342701.1|CI342701
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58613265|gb|CK040977.1|CK040977
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|13420567|gb|AU174657.1|AU174657
EST:     TTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88996905|gb|CI389571.1|CI389571
EST:     TTGTTCGGTTGGAAGGCACCAATCTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|29662111|gb|CB658386.1|CB658386
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58680521|gb|CK069208.1|CK069208
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86825242|gb|CI359932.1|CI359932
EST:     AGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: AGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86871574|gb|CI342373.1|CI342373
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTCCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86501937|gb|CI144570.1|CI144570
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88257659|gb|CI360245.1|CI360245
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTCCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88960354|gb|CI382232.1|CI382232
EST:     CGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: CGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86600824|gb|CI356581.1|CI356581
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88276830|gb|CI395993.1|CI395993
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88248561|gb|CI248410.1|CI248410
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88837181|gb|CI078541.1|CI078541
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88955385|gb|CI091477.1|CI091477
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88218703|gb|CI218552.1|CI218552
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86869426|gb|CI346286.1|CI346286
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88380358|gb|CI518728.1|CI518728
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTTTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|89194712|gb|CI117149.1|CI117149
EST:     TTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCCTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88247312|gb|CI247161.1|CI247161
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|29689244|gb|CB685519.1|CB685519
EST:     TTGATCGGTTGGAAGGGACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|14192047|gb|AU184258.1|AU184258
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|58031372|gb|CX728915.1|CX728915
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86421076|gb|CI057065.1|CI057065
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88982951|gb|CI250555.1|CI250555
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|2799259|gb|AA753784.1|AA753784
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACATTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|88245577|gb|CI245426.1|CI245426
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
EST: gi|86597133|gb|CI272728.1|CI272728
EST:     TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAG                         GAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG
genomic: TTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 75 (downstream exon)
Score: 120

GTTGACCTGAAGGTGCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTTGACCAAGGGAAGAGGATTCTAAAGgtaaaaatta ... cctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAACTATTTGTAGTATACCAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaagtcgtccttcactggaaactttcgtacctgactgtgatgtcctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAACTATTTGTAGTATACCAA
                              acctgac  putative branch site (score: 120)
                                            tcctgtt  putative PPT
                    aaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaaattacttgcatgcattctttttttgtaggaatatctgccaagtcgtccttcactggaaactttcgtacctgactgtgatgtcctgttgcagGAAAGTGGAATGACCTTAATCACTGCAGAGGATCTTGATGATGCGGCTGAGAAAGCTGTAAAAGCATCTGTCAAATAATTAACTATTTGTAGTATACCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG