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gtactctatattttagaattcttaagaaaactaagattaatagcaaaacaaaattctttcatatgtgtggcactaaaaacgttccaattttctctaatataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCATAGAGGAGATCGAGGCAGCAGCCGTGATAGGGACAGGGATTATGACCGC
species | Oryza sativa |
transcript | LOC_Os02g39300.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGAAAANCAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCAEST: gi|29632666|gb|CB637675.1|CB637675
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCAEST: gi|29666474|gb|CB662749.1|CB662749
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCAEST: gi|29673663|gb|CB669938.1|CB669938
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCAEST: gi|29666475|gb|CB662750.1|CB662750
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATTTAGCAAGGATCGCCAEST: gi|86601880|gb|CI258556.1|CI258556
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCAEST: gi|86427884|gb|CI072981.1|CI072981
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: ACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCAEST: gi|58608959|gb|CK036992.1|CK036992
genomic: ACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCACCCTAGCAAGGATCGCCEST: gi|218503772|gb|FG969027.1|FG969027
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATC-TAGCAAGGATCGCC
EST: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAG GTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
genomic: GAAGAGAAAAACAAAAGGCGCAAGATAGACCGAGCTGAGCATGAGAGAAGgtactctata ... atataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCA
aattctttcatatgtgtggcactaaaaacgttccaattttctctaatataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCATAGAGGAGATCGAGGCAGCAGCCGTGATAGGGACAGGGATTATGACCGC
aattttctctaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctatattttagaattcttaagaaaactaagattaatagcaaaacaaaattctttcatatgtgtggcactaaaaacgttccaattttctctaatataactagGTCCAGGGACAGGAGCCTGGAACGTGACAGAGCATCTAGCAAGGATCGCCATAGAGGAGATCGAGGCAGCAGCCGTGATAGGGACAGGGATTATGACCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC