1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtgaagttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagTTGACACCAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAG
species | Oryza sativa |
transcript | LOC_Os02g31874.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: NACATCTGTCTTTATAGGCATCTCCTTACTGNCACCCGACGACAGTAAAG TTGACNCCAAAGATGGTTCCTAGTGCCACCCAGGAACCTGCAATTGATGCAEST: gi|86593918|gb|CI260147.1|CI260147
genomic: GACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaag ... ttcttggcagTTGACACCAAAGATGGTT-CTAGTGCCACCCAGGAACCTGCAATTGATGCA
EST: GACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAG TTGACACCAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAA
genomic: GACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaag ... ttcttggcagTTGACACCAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAA
ctgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagTTGACACCAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAG
ctttaac putative branch site (score: 34)
ttctt putative PPT
ttttacagaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgaagttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagTTGACACCAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG