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gtatggcattccctgttccattaagtaattactttatgaataaattatttgttgggtgttaggtaatgtataagctgtacatatgtaatccaacttaccatattcagaatcctgtctttgcctttcttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCT
species | Oryza sativa |
transcript | LOC_Os02g30730.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|58679117|gb|CK067804.1|CK067804
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|38477088|gb|CF961221.1|CF961221
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: GGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGTGGGCCAAAAAG GTCGAGCACTTTEST: gi|58668329|gb|CK057015.1|CK057015
genomic: GGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTG-GGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCTAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|4716788|gb|AU057904.1|AU057904
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|44678577|gb|CR292011.1|CR292011
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGNCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|163926136|gb|EG712834.1|EG712834
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: GGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTGGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|86478715|gb|CI121348.1|CI121348
genomic: GGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|58667949|gb|CK056635.1|CK056635
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGATAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGTCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|29633765|gb|CB638774.1|CB638774
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|88985302|gb|CI006956.1|CI006956
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|27547935|gb|CA765873.2|CA765873
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|29632346|gb|CB637355.1|CB637355
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTEST: gi|58694197|gb|CK082884.1|CK082884
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
EST: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAG GTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
genomic: TGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGgtatggcatt ... cttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCT
atatgtaatccaacttaccatattcagaatcctgtctttgcctttcttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCT
aacttac putative branch site (score: 2)
tcctgtctttgccttt putative PPT
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcattccctgttccattaagtaattactttatgaataaattatttgttgggtgttaggtaatgtataagctgtacatatgtaatccaacttaccatattcagaatcctgtctttgcctttcttttggcagGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA