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gtggagtggcactacatgttcaactttaacattgtttataacagtggtattcttacacactgtcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG
species | Oryza sativa |
transcript | LOC_Os02g19510.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|29616239|gb|CB621251.1|CB621251
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|29641724|gb|CB646731.1|CB646731
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|29641418|gb|CB646425.1|CB646425
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|58596057|gb|CK006585.1|CK006585
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|29676039|gb|CB672314.1|CB672314
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|38475807|gb|CF959940.1|CF959940
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|33795503|gb|CF323621.1|CF323621
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGEST: gi|27577797|gb|CB000492.1|CB000492
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
EST: CCTTCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG AATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
genomic: CAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAGgtggagtggc ... tcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTG
gttcaactttaacattgtttataacagtggtattcttacacactgtcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG
ttcttac putative branch site (score: 22)
ctgtcttct putative PPT
tttaacattgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggagtggcactacatgttcaactttaacattgtttataacagtggtattcttacacactgtcttctgcagAATGACTTGGTCCATGGATGGGGTCTTGATTTCGCTCTAAGGAAATGTGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG