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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaaaatagttgttggtctatattctgtggaagataggagattaaaatttactaatgtactgatgttagagtcaccatgaagttgtgcttaccattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCGAACAGTGAAATTCTTACTGCTTCCTAGATCAGGGTTTTTGCCTGCTCAC

Basic information

species Oryza sativa
transcript LOC_Os02g15550.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88530764|gb|CI459182.1|CI459182
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACNACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|13895929|gb|AU182265.1|AU182265
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|29664251|gb|CB660526.1|CB660526
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86541998|gb|CI182204.1|CI182204
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|89195347|gb|CI051460.1|CI051460
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86904643|gb|CI321551.1|CI321551
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88261739|gb|CI365315.1|CI365315
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCCTTGAAAGG                         GAACAACAAGGAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88536186|gb|CI465916.1|CI465916
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|27546253|gb|CA764321.2|CA764321
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAATGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88961587|gb|CI096851.1|CI096851
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86497824|gb|CI140457.1|CI140457
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88543468|gb|CI473478.1|CI473478
EST:     CAACCTTTGCAAGGAGAGAGGTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|38479602|gb|CF963699.1|CF963699
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|87027956|gb|CI276312.1|CI276312
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86428932|gb|CI075613.1|CI075613
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88522281|gb|CI450027.1|CI450027
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|87010799|gb|CI312491.1|CI312491
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCAG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88964961|gb|CI097829.1|CI097829
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|29667241|gb|CB663516.1|CB663516
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88257007|gb|CI359395.1|CI359395
EST:     TAGAGGCGTATT-TACTACCGTT-AAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: TAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88531179|gb|CI459637.1|CI459637
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86882705|gb|CI327356.1|CI327356
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88535675|gb|CI462490.1|CI462490
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86484793|gb|CI127426.1|CI127426
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACTACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86859105|gb|CI277026.1|CI277026
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|33816988|gb|CF334328.1|CF334328
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|87033906|gb|CI188530.1|CI188530
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86864424|gb|CI334143.1|CI334143
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88256390|gb|CI358778.1|CI358778
EST:     AACCTTTGGCAAGGAGAGAGGTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: AACCTTT-GCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86834116|gb|CI340255.1|CI340255
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86835431|gb|CI347888.1|CI347888
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|38471600|gb|CF955731.1|CF955731
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAA
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAA
EST: gi|87028025|gb|CI257185.1|CI257185
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88531267|gb|CI459732.1|CI459732
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88521827|gb|CI448992.1|CI448992
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88528516|gb|CI456759.1|CI456759
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|29657801|gb|CB654076.1|CB654076
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88993298|gb|CI257726.1|CI257726
EST:     AACCTTTGCCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: AACCTTTGC-AAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86477600|gb|CI120233.1|CI120233
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88850542|gb|CI093223.1|CI093223
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|29642052|gb|CB647059.1|CB647059
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|29619281|gb|CB624293.1|CB624293
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|89188070|gb|CI115319.1|CI115319
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|86542055|gb|CI182261.1|CI182261
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|88958719|gb|CI381522.1|CI381522
EST:     GAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: GAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
EST: gi|29672899|gb|CB669174.1|CB669174
EST:     CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGG                         GAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG
genomic: CAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGgtaagttgct ... accattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttactaatgtactgatgttagagtcaccatgaagttgtgcttaccattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCGAACAGTGAAATTCTTACTGCTTCCTAGATCAGGGTTTTTGCCTGCTCAC
       taatgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaaaatagttgttggtctatattctgtggaagataggagattaaaatttactaatgtactgatgttagagtcaccatgaagttgtgcttaccattacagGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCGAACAGTGAAATTCTTACTGCTTCCTAGATCAGGGTTTTTGCCTGCTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA