1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtaatttctaggcagatatacctttcatgaacaaaaatactaagttaagatgaaaagaccgacttatgtgcctgcttgttcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTCGGTGACATTGTGGGTTCAATTTCTTGCCTGCTGCCGGACCATAGGACA
species | Oryza sativa |
transcript | LOC_Os02g14130.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATATATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|24468658|gb|CA305607.1|CA305607
genomic: GTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATATATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|29660511|gb|CB656786.1|CB656786
genomic: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|88233437|gb|CI233286.1|CI233286
genomic: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|89183773|gb|CI046338.1|CI046338
genomic: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: TGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|89173615|gb|CI041508.1|CI041508
genomic: TGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: ATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|29665852|gb|CB662127.1|CB662127
genomic: ATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|29631169|gb|CB636178.1|CB636178
genomic: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|88834708|gb|CI077991.1|CI077991
genomic: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: CTGTTCAACTTTAAGCAAGAA CTAGCGAATTGATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|86414532|gb|CI068935.1|CI068935
genomic: CTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: CAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATTNATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTEST: gi|58677693|gb|CK066380.1|CK066380
genomic: CAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
EST: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAA CTAGCGAATATATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
genomic: GGTTGCCAAATGGACGTCCATTCCCCCCACTGTTCAACTTTAAGCAAGAAgtaagtaatt ... tcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCT
aaatactaagttaagatgaaaagaccgacttatgtgcctgcttgttcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTCGGTGACATTGTGGGTTCAATTTCTTGCCTGCTGCCGGACCATAGGACA
cttgttc CT-rich tract
taagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatttctaggcagatatacctttcatgaacaaaaatactaagttaagatgaaaagaccgacttatgtgcctgcttgttcatttgcagCTAGCGAATTTATCGCCAGAGCTCATCAACAGGTTGATACCAGAGCATGCTCGGTGACATTGTGGGTTCAATTTCTTGCCTGCTGCCGGACCATAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC