1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aacagctagtcaatcttataccgcagcataccgtcacattgccttggagcggtacatatgctattcttacacaactaatctctggtttttgcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATGACTATCCATACAAGCTTGTCACACTATCCTCTGAACTGAAGCGGAGAA
species | Oryza sativa |
transcript | LOC_Os02g10230.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAACA-GCTGTCAAAGCAGTCTTTGTTGGCATGGCCTTCATGTCTGCAAG CTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATEST: gi|86844036|gb|CI336725.1|CI336725
genomic: AAACAGGCTGTCAAAGCAGTCTTTGTTGGCATGGCCTTCATGTCTGCAAGgtttgttgat ... gcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACAT
EST: GCATGGCCTTCATGTCTGCAAG CTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATEST: gi|89184971|gb|CI049517.1|CI049517
genomic: GCATGGCCTTCATGTCTGCAAGgtttgttgat ... gcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACAT
EST: AAACAGGCTGTCAAAGCAGTCTTTGTTGGCATGGCCTTCATGTCTGCAAG CTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATEST: gi|88223680|gb|CI223529.1|CI223529
genomic: AAACAGGCTGTCAAAGCAGTCTTTGTTGGCATGGCCTTCATGTCTGCAAGgtttgttgat ... gcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACAT
EST: AAACAGGCTGTCAAAGCAGTCTTTGTTGGCATGGCCTTCATGTCTGCAAG CTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACAT
genomic: AAACAGGCTGTCAAAGCAGTCTTTGTTGGCATGGCCTTCATGTCTGCAAGgtttgttgat ... gcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACAT
ggagcggtacatatgctattcttacacaactaatctctggtttttgcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATGACTATCCATACAAGCTTGTCACACTATCCTCTGAACTGAAGCGGAGAA
aactaat putative branch site (score: 21)
tttttgc putative PPT
tattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagctagtcaatcttataccgcagcataccgtcacattgccttggagcggtacatatgctattcttacacaactaatctctggtttttgcattgtcagCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATGACTATCCATACAAGCTTGTCACACTATCCTCTGAACTGAAGCGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - -gcatacc
- - - - - - - - - - - - - - - - - - - -tgccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa