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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctataggcagtaaaactaaaaatatttgaaattttttcaccctcttattatttttgtgtcatgctatgcactgcgactgagttgcgtgctgtgattgcagGTTCTTGCAGTTAAGAAGATAGATAGTTCAGCCCTTTCCTTGCAGGAAGAAGACAATTTTCTTGAGGCTGTATCGAGCATGTCACGGCTAAGGCATCCAA

Basic information

species Oryza sativa
transcript LOC_Os02g09740.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g09740.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 11
-ctataggcagtaaaactaaaaatatttgaaattttttcaccctcttattatttttgtgtcatgctatgcactgcgactgagttgcgtgctgtgattgcagGTTCTTGCAGTTAAGAAGATAGATAGTTCAGCCCTTTCCTTGCAGGAAGAAGACAATTTTCTTGAGGCTGTATCGAGCATGTCACGGCTAAGGCATCCAA
    | | |    ||  || |  | |||  |     |   |       || ||| |  ||||| || ||  ||||  |||||||| ||| | ||||  ||||||||||| ||||| |||||||||||  | || ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
gtagtggtccacgaatatacatgttttttcagaccctctgcatgacagttgtttgttggtcatcctgtgtgctgcacctgagttgtgtgttatgat-acagGTTCTTGCTGTTAAAAAGATAGATAGCGCCGCACTTTCTTTACAGGAAGAAGACAATTTCCTTGAGGCTGTATCGAGCATGTCTCGGCTAAGGCATCCAA

upper sequence: LOC_Os02g09740.2 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 11
----ctataggcagtaaaactaaaaatatttgaaattttttcaccctcttattatttttgtgtcatgctatgcactgcgactgagttgcgtgctgtgattgcagGTTCTTGCAGTTAAGAAGATAGATAGTTCAGCCCTTTCCTTGCAGGAAGAAGACAATTTTCTTGAGGCTGTATCGAGCATGTCACGGCTAAGGCATCCAA
    | ||      |  |       || | || | || ||||     |||||   |  | |  || | || | |       | |||    || | ||||   ||    | ||| ||||||||||||| | | |||| || || || || |||||||| ||||||||||||||||| || |  ||||| || || ||||| | ||
gataccattttgcttggatggttggatctctgcagttgtttctttagcttat--atgatatccca-gataagtaacaatgtttagtcatctgatttgatc-tagACAATGGCAATTAAGAAGATAGACAATGCAGCACTGTCTTTACAAGAAGAAGATAATTTTCTTGAGGCTGTTTCAAATATGTCCCGTCTGAGGCACCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58681620|gb|CK070307.1|CK070307
EST:     GAGAGGGCTCACTTGGTCGTGTTTACAAGGCCGATTTCCCCAATGGAAAG                         GTTCTTGCAGTTAAGAAGATAGATAGTTCAGCCCTTTCCTTGCAGGAAGAA
genomic: GAGAGGGCTCACTTGGTCGTGTTTACAAGGCCGATTTCCCCAATGGAAAGgtaaaatatg ... gtgattgcagGTTCTTGCAGTTAAGAAGATAGATAGTTCAGCCCTTTCCTTGCAGGAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatttttgtgtcatgctatgcactgcgactgagttgcgtgctgtgattgcagGTTCTTGCAGTTAAGAAGATAGATAGTTCAGCCCTTTCCTTGCAGGAAGAAGACAATTTTCTTGAGGCTGTATCGAGCATGTCACGGCTAAGGCATCCAA
     tttttgt  TA-rich tract