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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaccttttctgtccttagtctatattttcatctttcttggatcaattaaatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcagATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGAT

Basic information

species Oryza sativa
transcript LOC_Os02g04660.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04660.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G011456_T03 (Zea mays), 3'ss of exon 16
gtactgaccttttctgtccttagtctatattttcatctttcttgg-atcaattaaatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcagATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGAT
||||||  | |||   || |     |||||||||    ||| ||    |||  | ||   | ||||| |||         ||  | ||    |||||||| |||||||||||||| ||||| ||  |||| |||||||| |||||| | ||| |||| 
gtactggaccttt---tcttatacatatattttctcaattcctgatgccaaaaacattttaaatatcattt--------gattgtctg----cttatgtttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC

upper sequence: LOC_Os02g04660.2 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G169927_T02 (Zea mays), 3'ss of exon 15
gtactgaccttttctgtccttagtctatattttcatctttcttgg-atcaattaaatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcagATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGAT
||||||| | |||   || |     ||||||| | |  ||| ||   ||||  | ||   | |||      | |  ||  ||  ||||    |||||||| ||||| |||||||| ||||| ||  |||| ||||||||||||||| | |||||||||
gtactgaaccttt---tcttatacatatatttccttaattcctgatgtcaaaaatatgttaaataa-----tatcatttgattgtttg----cttatgtttctttgtagATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcagATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGAT
                                tgataac  putative branch site (score: 2)
                                          tgttccttt  putative PPT
                      ttatatcatttgataa  TA-rich tract