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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggggctcctgcttttcttttccgttggatgatcttcatcttattatataggcttgattacgttttggaagaactcattgactcgtttcatcatctgattccattaaagttttgccttcaacagcagAATCCATTCCGCTGGTGATGGACGGGTTTAAAGCAAGAAGCGGTGATGGAGCTCGGTCGTGCGTCTCGTGTGTTGTTTTGTGTGCGTCGTCGTCGCTGTA

Basic information

species Oryza sativa
transcript LOC_Os02g04030.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04030.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G171349_T02 (Zea mays), 3'ss of exon 8
gtaaggggctcctgcttttcttttccgttggatgatcttcatcttattatataggcttgattacgttttggaagaactcattgactcgtttcatcatctgattccattaaagttttgccttcaacagcagAATCCATTCCGCTGGTGATGGACGGGTTTAAAGCAAGAAGCGGTGATGGAGCTCGGTCGTGCGTCTCGTGTGTTGTTTTGTGTGCGTCGTCGTCGCTGTA
|||||    ||| |   | |  | | ||    ||   |||   |  |    | ||||     ||     ||         |||| | ||    | | |||||| |||||||||||||||| ||||||||||| || ||||| |||||| |  |  |          |    || |  || ||  | ||  | |  ||  | |    || |    |     |||     | 
gtaagtcagtccag---tccagtccagtccagtgtgtttctgatcttggcgttggct--gccactccgcgg---------ttgatttgt---gtgagctgatttcattaaagttttgcctccaacagCAGAACCCGTTCCGATGGTGACGCGCCAGGGGGGGAAGGGCGATGGCG-CGGTGCATGATCCAGTGA-TCAGGCGGCCCTTGGACCCCCAATACGTATGCAT-

upper sequence: LOC_Os02g04030.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G171349_T01 (Zea mays), 3'ss of exon 8
gtaaggggctcctgcttttcttttccgttggatgatcttcatcttattatataggcttgattacgttttggaagaactcattgactcgtttcatcatctgattccattaaagttttgccttcaacagcagAATCCATTCCGCTGGTGATGGAC----GGGTTTAAAGCAA-GAAGCGGTGATGGAGCT--CGGTCGTGCGTCTCGTGTGTTGT---TTTGTGTGCGTCGTCGTCGCTGTA
|||||    ||| |   | |  | | ||    ||   |||   |  |    | ||||     ||     ||         |||| | ||    | | |||||| |||||||||||||||| ||||||||||| || ||||| |||||| |  |    |||   |  || | |  ||||||   || |    | ||  ||| | | ||         |  || ||| || |          
gtaagtcagtccag---tccagtccagtccagtgtgtttctgatcttggcgttggct--gccactccgcgg---------ttgatttgt---gtgagctgatttcattaaagttttgcctccaacagcagAACCCGTTCCGATGGTGACGCGCCAGGGGGGGAAGGGCGATGGCGCGGTGCATGATCCAGTGATCAGGCGGCCCTTGGACCCCCAATACGTATGCATCCT----------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcattgactcgtttcatcatctgattccattaaagttttgccttcaacagcagAATCCATTCCGCTGGTGATGGACGGGTTTAAAGCAAGAAGCGGTGATGGAGCTCGGTCGTGCGTCTCGTGTGTTGTTTTGTGTGCGTCGTCGTCGCTGTA
                                     ttttgccttc  CT-rich tract
                              attaaagtttt  TA-rich tract