1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgctggcttgcatcctcttatgttacaaaataaatgctttctcctttaagctctgttattatggattatgccacttaaattaaatcatttccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGA
species | Oryza sativa |
transcript | LOC_Os02g04020.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATEST: gi|58598797|gb|CK009325.1|CK009325
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATEST: gi|58591675|gb|CF989983.1|CF989983
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATEST: gi|29625318|gb|CB630329.1|CB630329
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATEST: gi|58587946|gb|CF986254.1|CF986254
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: CTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGGGTGAATACGATEST: gi|29625357|gb|CB630368.1|CB630368
genomic: CTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAATAG GTCAAGATGGTTAGAGCCACGAGCTTTTCEST: gi|58663368|gb|CK052054.1|CK052054
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTC
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATEST: gi|29640359|gb|CB645368.1|CB645368
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATEST: gi|58677461|gb|CK066148.1|CK066148
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
EST: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAG GTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
genomic: TACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGgttggtagtt ... ccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGAT
ttaagctctgttattatggattatgccacttaaattaaatcatttccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGA
tcatttccttcttc CT-rich tract
acttaaattaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctggcttgcatcctcttatgttacaaaataaatgctttctcctttaagctctgttattatggattatgccacttaaattaaatcatttccttcttcagGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
tgctggc
- - - - tgcatcc
- - - - - - - -tcttatg
- - - - - - - - - - - -tacaaaa
- - - - - - - - - - - - - - - - aatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - -tctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgccac