1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcgagattaattttgactaattaatcctgtataaatgtttggactgtgacagaaacaaaactagtagtatttctcattgaggtttactttcaaggtgcagCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCGACATCGACAAAGACGGGAGAATAAGCTTGTCGGAGTTCCGCAAGCTCCTGCGGA
species | Oryza sativa |
transcript | LOC_Os02g03410.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGGTGCAGEST: gi|44675829|gb|CR289263.1|CR289263
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAA---T---Ggtaagtttca ... caagg
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GEST: gi|44675829|gb|CR289263.1|CR289263
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... caaggtgcag-
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GEST: gi|44675829|gb|CR289263.1|CR289263
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... caaggtgcag-
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GEST: gi|44675829|gb|CR289263.1|CR289263
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... caaggtgcag-
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GEST: gi|87024700|gb|CI259415.1|CI259415
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... caaggtgcag-
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG CACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCGACATCEST: gi|87027206|gb|CI278238.1|CI278238
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... caaggtgcagCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCGACATC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGGTGCAG
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAA---T---Ggtaagtttca ... caagg
gtgacagaaacaaaactagtagtatttctcattgaggtttactttcaaggtgcagCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCGACATCGACAAAGACGGGAGAATAAGCTTGTCGGAGTTCCGCAAGCTCCTGCGGA
tttactttc CT-rich tract
aaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagattaattttgactaattaatcctgtataaatgtttggactgtgacagaaacaaaactagtagtatttctcattgaggtttactttcaaggtgcagCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCGACATCGACAAAGACGGGAGAATAAGCTTGTCGGAGTTCCGCAAGCTCCTGCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - tcctgta
- - - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - -ctgtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa