1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgataaatgcagcaaacagcaaacacatactgaaatgatcatcctgtggtttcgatttaataataagaatgttaaatctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTTGCTCACAGATATTTGAGGAGGCTGGTTGTGATACACCAGCTAGCCCTA
species | Oryza sativa |
transcript | LOC_Os02g03260.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACEST: gi|33822977|gb|CF337293.1|CF337293
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagG-TGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAAC
EST: CGGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|11442959|gb|BF430855.1|BF430855
genomic: CGGGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|29677182|gb|CB673457.1|CB673457
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|86493658|gb|CI136291.1|CI136291
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: AGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|29632468|gb|CB637477.1|CB637477
genomic: AGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|38477001|gb|CF961134.1|CF961134
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACGGAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|58666580|gb|CK055266.1|CK055266
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|86503655|gb|CI146288.1|CI146288
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|88221360|gb|CI221316.1|CI221316
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: TTCCGGCGACACATAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|38478547|gb|CF962680.1|CF962680
genomic: TTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAGGCTEST: gi|29658442|gb|CB654717.1|CB654717
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|29628819|gb|CB633830.1|CB633830
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|29636583|gb|CB641592.1|CB641592
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|88223234|gb|CI223083.1|CI223083
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|29616438|gb|CB621450.1|CB621450
genomic: GAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|218490400|gb|FG966882.1|FG966882
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTEST: gi|313084027|gb|HO213810.1|HO213810
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACT
EST: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAG GTGTGGATGGACATTTATAGCATCCCTGT
genomic: GGGAAGAAGGTTAAAGTTCCCACTTTTCTCGTTCCGGCGACACAAAAGgtgataaatg ... atctatgtagGTGTGGATGGACATTTATAGCATCCCTGT
tgaaatgatcatcctgtggtttcgatttaataataagaatgttaaatctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTTGCTCACAGATATTTGAGGAGGCTGGTTGTGATACACCAGCTAGCCCTA
atttaat putative branch site (score: 83)
atttaataataagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgataaatgcagcaaacagcaaacacatactgaaatgatcatcctgtggtttcgatttaataataagaatgttaaatctatgtagGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTTGCTCACAGATATTTGAGGAGGCTGGTTGTGATACACCAGCTAGCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG